RNA–Protein interactions for RNA: ENST00000466489.1

PMF1-204, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-204ENST00000466489 PLEKHG2Q9H7P9 1386 aa13.22□□□□□ -0.29
PMF1-204ENST00000466489 IGSF1Q8N6C5 1336 aa13.22□□□□□ -0.29
PMF1-204ENST00000466489 EYA1Q99502 592 aa13.22□□□□□ -0.29
PMF1-204ENST00000466489 RGPD1P0DJD0 1748 aa13.22□□□□□ -0.29
PMF1-204ENST00000466489 U2SURPO15042 1029 aaKnown RBP13.21□□□□□ -0.29
PMF1-204ENST00000466489 USHBP1Q8N6Y0 703 aa13.21□□□□□ -0.29
PMF1-204ENST00000466489 OVOS2A0A0G2JMS6 1433 aa13.21□□□□□ -0.3
PMF1-204ENST00000466489 NCAPD2Q15021 1401 aa13.21□□□□□ -0.3
PMF1-204ENST00000466489 NEFMP07197 916 aa13.2□□□□□ -0.3
PMF1-204ENST00000466489 IL13P35225 146 aa13.2□□□□□ -0.3
PMF1-204ENST00000466489 SPG7Q9UQ90 795 aa13.2□□□□□ -0.3
PMF1-204ENST00000466489 COL3A1P02461 1466 aaPredicted RBP13.2□□□□□ -0.3
PMF1-204ENST00000466489 PKD1L3Q7Z443 1732 aa13.19□□□□□ -0.3
PMF1-204ENST00000466489 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
PMF1-204ENST00000466489 FAM196AQ6ZSG2 479 aa13.19□□□□□ -0.3
PMF1-204ENST00000466489 ZCRB1Q8TBF4 217 aaKnown RBP13.19□□□□□ -0.3
PMF1-204ENST00000466489 TSHZ2Q9NRE2 1034 aa13.19□□□□□ -0.3
PMF1-204ENST00000466489 MEGF6O75095 1541 aa13.18□□□□□ -0.3
PMF1-204ENST00000466489 PCDH11XQ9BZA7 1347 aa13.18□□□□□ -0.3
PMF1-204ENST00000466489 PCDH11YQ9BZA8 1340 aa13.18□□□□□ -0.3
PMF1-204ENST00000466489 HNRNPUQ00839 825 aaKnown RBP eCLIP13.18□□□□□ -0.3
PMF1-204ENST00000466489 PNNQ9H307 717 aaKnown RBP13.18□□□□□ -0.3
PMF1-204ENST00000466489 PPP4R2Q9NY27 417 aa13.18□□□□□ -0.3
PMF1-204ENST00000466489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.3
PMF1-204ENST00000466489 KDRP35968 1356 aa13.18□□□□□ -0.3
PMF1-204ENST00000466489 ZBED9Q6R2W3 1325 aa13.17□□□□□ -0.3
PMF1-204ENST00000466489 U2AF1L5P0DN76 240 aaPredicted RBP13.17□□□□□ -0.3
PMF1-204ENST00000466489 U2AF1Q01081 240 aaKnown RBP eCLIP13.17□□□□□ -0.3
PMF1-204ENST00000466489 SF3B2Q13435 895 aaKnown RBP13.17□□□□□ -0.3
PMF1-204ENST00000466489 AMOTQ4VCS5 1084 aa13.17□□□□□ -0.3
PMF1-204ENST00000466489 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
PMF1-204ENST00000466489 WDR43Q15061 677 aaKnown RBP eCLIP13.16□□□□□ -0.3
PMF1-204ENST00000466489 DDX54Q8TDD1 881 aaKnown RBP13.16□□□□□ -0.3
PMF1-204ENST00000466489 SHANK3Q9BYB0 1731 aa13.16□□□□□ -0.3
PMF1-204ENST00000466489 HMOX1P09601 288 aa13.15□□□□□ -0.3
PMF1-204ENST00000466489 CCDC125Q86Z20 511 aa13.15□□□□□ -0.3
PMF1-204ENST00000466489 ANP32EQ9BTT0 268 aa13.15□□□□□ -0.3
PMF1-204ENST00000466489 SBF2Q86WG5 1849 aa13.14□□□□□ -0.31
PMF1-204ENST00000466489 HSP90AB1P08238 724 aaKnown RBP13.14□□□□□ -0.31
PMF1-204ENST00000466489 C1orf141Q5JVX7 400 aa13.14□□□□□ -0.31
PMF1-204ENST00000466489 AEBP1Q8IUX7 1158 aa13.14□□□□□ -0.31
PMF1-204ENST00000466489 FCHSD2O94868 740 aa13.13□□□□□ -0.31
PMF1-204ENST00000466489 IFNL2Q8IZJ0 200 aa13.13□□□□□ -0.31
PMF1-204ENST00000466489 BCL9O00512 1426 aa13.13□□□□□ -0.31
PMF1-204ENST00000466489 FAM182BQ5T319 152 aa13.12□□□□□ -0.31
PMF1-204ENST00000466489 MARCH10Q8NA82 808 aaPredicted RBP13.12□□□□□ -0.31
PMF1-204ENST00000466489 MRS2Q9HD23 443 aa13.12□□□□□ -0.31
PMF1-204ENST00000466489 FANCIQ9NVI1 1328 aa13.12□□□□□ -0.31
PMF1-204ENST00000466489 MAPK8IP3Q9UPT6 1336 aa13.12□□□□□ -0.31
PMF1-204ENST00000466489 DOT1LQ8TEK3 1739 aa13.11□□□□□ -0.31
PMF1-204ENST00000466489 ZNF530Q6P9A1 599 aaPredicted RBP13.11□□□□□ -0.31
PMF1-204ENST00000466489 GAS2L2Q8NHY3 880 aa13.11□□□□□ -0.31
PMF1-204ENST00000466489 NHSQ6T4R5 1651 aa13.11□□□□□ -0.31
PMF1-204ENST00000466489 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
PMF1-204ENST00000466489 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
PMF1-204ENST00000466489 BAG6P46379 1132 aa13.09□□□□□ -0.31
PMF1-204ENST00000466489 RSPH6AQ9H0K4 717 aa13.09□□□□□ -0.31
PMF1-204ENST00000466489 TNS1Q9HBL0 1735 aaKnown RBP13.09□□□□□ -0.31
PMF1-204ENST00000466489 TRIM37O94972 964 aa13.08□□□□□ -0.32
PMF1-204ENST00000466489 PHKG2P15735 406 aa13.08□□□□□ -0.32
PMF1-204ENST00000466489 AKAP4Q5JQC9 854 aa13.08□□□□□ -0.32
PMF1-204ENST00000466489 UPF1Q92900 1129 aaKnown RBP eCLIP13.08□□□□□ -0.32
PMF1-204ENST00000466489 SYTL4Q96C24 671 aaPredicted RBP13.08□□□□□ -0.32
PMF1-204ENST00000466489 BCL11BQ9C0K0 894 aaPredicted RBP13.08□□□□□ -0.32
PMF1-204ENST00000466489 EP400Q96L91 3159 aa13.08□□□□□ -0.32
PMF1-204ENST00000466489 ITGB4P16144 1822 aa13.07□□□□□ -0.32
PMF1-204ENST00000466489 CYP27B1O15528 508 aa13.07□□□□□ -0.32
PMF1-204ENST00000466489 DCAF5Q96JK2 942 aa13.07□□□□□ -0.32
PMF1-204ENST00000466489 RGPD3A6NKT7 1758 aaPredicted RBP13.07□□□□□ -0.32
PMF1-204ENST00000466489 RGPD4Q7Z3J3 1758 aa13.07□□□□□ -0.32
PMF1-204ENST00000466489 SCN11AQ9UI33 1791 aa13.07□□□□□ -0.32
PMF1-204ENST00000466489 BTAF1O14981 1849 aa13.06□□□□□ -0.32
PMF1-204ENST00000466489 NKX1-1Q15270 411 aaPredicted RBP13.06□□□□□ -0.32
PMF1-204ENST00000466489 ACSBG1Q96GR2 724 aa13.06□□□□□ -0.32
PMF1-204ENST00000466489 GNAT3A8MTJ3 354 aa13.05□□□□□ -0.32
PMF1-204ENST00000466489 APBA3O96018 575 aa13.05□□□□□ -0.32
PMF1-204ENST00000466489 HMGB2P26583 209 aaKnown RBP13.05□□□□□ -0.32
PMF1-204ENST00000466489 MTHFSDQ2M296 383 aaKnown RBP13.05□□□□□ -0.32
PMF1-204ENST00000466489 RTF1Q92541 710 aaKnown RBP13.05□□□□□ -0.32
PMF1-204ENST00000466489 TMOD3Q9NYL9 352 aa13.05□□□□□ -0.32
PMF1-204ENST00000466489 RBM19Q9Y4C8 960 aaKnown RBP13.05□□□□□ -0.32
PMF1-204ENST00000466489 MAP3K5Q99683 1374 aa13.05□□□□□ -0.32
PMF1-204ENST00000466489 DLG5Q8TDM6 1919 aa13.04□□□□□ -0.32
PMF1-204ENST00000466489 ERVV-2B6SEH9 535 aa13.04□□□□□ -0.32
PMF1-204ENST00000466489 TOGARAM1Q9Y4F4 1720 aa13.04□□□□□ -0.32
PMF1-204ENST00000466489 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
PMF1-204ENST00000466489 CABP4P57796 275 aa13.03□□□□□ -0.32
PMF1-204ENST00000466489 LMOD3Q0VAK6 560 aa13.03□□□□□ -0.32
PMF1-204ENST00000466489 MPRIPQ6WCQ1 1025 aa13.03□□□□□ -0.32
PMF1-204ENST00000466489 RUNDC1Q96C34 613 aa13.03□□□□□ -0.32
PMF1-204ENST00000466489 HTATSF1O43719 755 aaKnown RBP13.02□□□□□ -0.33
PMF1-204ENST00000466489 ERICH6Q7L0X2 663 aa13.02□□□□□ -0.33
PMF1-204ENST00000466489 SMARCC1Q92922 1105 aaPredicted RBP13.02□□□□□ -0.33
PMF1-204ENST00000466489 PHACTR3Q96KR7 559 aa13.02□□□□□ -0.33
PMF1-204ENST00000466489 ADAMTS8Q9UP79 889 aa13.02□□□□□ -0.33
PMF1-204ENST00000466489 KCNQ2O43526 872 aa13.01□□□□□ -0.33
PMF1-204ENST00000466489 TEFQ10587 303 aa13.01□□□□□ -0.33
PMF1-204ENST00000466489 NFE2L2Q16236 605 aa13.01□□□□□ -0.33
PMF1-204ENST00000466489 ADAMTS7Q9UKP4 1686 aa13□□□□□ -0.33
PMF1-204ENST00000466489 KDM6AO15550 1401 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms