RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 PDE3BQ13370 1112 aa15.78■□□□□ 0.12
CPNE1-221ENST00000462352 KRT27Q7Z3Y8 459 aa15.78■□□□□ 0.12
CPNE1-221ENST00000462352 U2AF1L5P0DN76 240 aaPredicted RBP15.77■□□□□ 0.12
CPNE1-221ENST00000462352 U2AF1Q01081 240 aaKnown RBP eCLIP15.77■□□□□ 0.124e-24■■□□□ 12.7
CPNE1-221ENST00000462352 CCDC184Q52MB2 194 aa15.76■□□□□ 0.11
CPNE1-221ENST00000462352 ZCRB1Q8TBF4 217 aaKnown RBP15.76■□□□□ 0.11
CPNE1-221ENST00000462352 PLEKHG2Q9H7P9 1386 aa15.75■□□□□ 0.11
CPNE1-221ENST00000462352 FAM182BQ5T319 152 aa15.74■□□□□ 0.11
CPNE1-221ENST00000462352 MARCH10Q8NA82 808 aaPredicted RBP15.74■□□□□ 0.11
CPNE1-221ENST00000462352 RSPH6AQ9H0K4 717 aa15.74■□□□□ 0.11
CPNE1-221ENST00000462352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.74■□□□□ 0.11
CPNE1-221ENST00000462352 PKD1L3Q7Z443 1732 aa15.74■□□□□ 0.11
CPNE1-221ENST00000462352 FCHSD2O94868 740 aa15.73■□□□□ 0.11
CPNE1-221ENST00000462352 DDX54Q8TDD1 881 aaKnown RBP15.73■□□□□ 0.11
CPNE1-221ENST00000462352 MRS2Q9HD23 443 aa15.73■□□□□ 0.11
CPNE1-221ENST00000462352 SPG7Q9UQ90 795 aa15.73■□□□□ 0.11
CPNE1-221ENST00000462352 SHANK3Q9BYB0 1731 aa15.73■□□□□ 0.11
CPNE1-221ENST00000462352 PCDH11XQ9BZA7 1347 aa15.72■□□□□ 0.11
CPNE1-221ENST00000462352 PCDH11YQ9BZA8 1340 aa15.72■□□□□ 0.11
CPNE1-221ENST00000462352 PRKAR2BP31323 418 aa15.72■□□□□ 0.11
CPNE1-221ENST00000462352 WDR43Q15061 677 aaKnown RBP eCLIP15.72■□□□□ 0.11
CPNE1-221ENST00000462352 AMOTQ4VCS5 1084 aa15.72■□□□□ 0.11
CPNE1-221ENST00000462352 PLEKHO1Q53GL0 409 aaPredicted RBP15.72■□□□□ 0.11
CPNE1-221ENST00000462352 CYP27B1O15528 508 aa15.71■□□□□ 0.11
CPNE1-221ENST00000462352 FAM196AQ6ZSG2 479 aa15.69■□□□□ 0.1
CPNE1-221ENST00000462352 PHACTR3Q96KR7 559 aa15.69■□□□□ 0.1
CPNE1-221ENST00000462352 ADAMTS8Q9UP79 889 aa15.69■□□□□ 0.1
CPNE1-221ENST00000462352 PHKG2P15735 406 aa15.68■□□□□ 0.1
CPNE1-221ENST00000462352 MTHFSDQ2M296 383 aaKnown RBP15.68■□□□□ 0.1
CPNE1-221ENST00000462352 ZNF530Q6P9A1 599 aaPredicted RBP15.68■□□□□ 0.1
CPNE1-221ENST00000462352 IFNL2Q8IZJ0 200 aa15.68■□□□□ 0.1
CPNE1-221ENST00000462352 MIER1Q8N108 512 aa15.68■□□□□ 0.1
CPNE1-221ENST00000462352 PNISRQ8TF01 805 aaKnown RBP15.68■□□□□ 0.1
CPNE1-221ENST00000462352 BCL9O00512 1426 aa15.68■□□□□ 0.1
CPNE1-221ENST00000462352 PLEKHF1Q96S99 279 aa15.67■□□□□ 0.1
CPNE1-221ENST00000462352 PNNQ9H307 717 aaKnown RBP15.67■□□□□ 0.1
CPNE1-221ENST00000462352 CCER2I3L3R5 266 aa15.66■□□□□ 0.1
CPNE1-221ENST00000462352 NKX1-1Q15270 411 aaPredicted RBP15.66■□□□□ 0.1
CPNE1-221ENST00000462352 C1orf141Q5JVX7 400 aa15.66■□□□□ 0.1
CPNE1-221ENST00000462352 GAS2L2Q8NHY3 880 aa15.66■□□□□ 0.1
CPNE1-221ENST00000462352 NEFMP07197 916 aa15.65■□□□□ 0.1
CPNE1-221ENST00000462352 EP400Q96L91 3159 aa15.65■□□□□ 0.1
CPNE1-221ENST00000462352 AKAP4Q5JQC9 854 aa15.64■□□□□ 0.09
CPNE1-221ENST00000462352 CCDC146Q8IYE0 955 aa15.64■□□□□ 0.09
CPNE1-221ENST00000462352 ACSBG1Q96GR2 724 aa15.64■□□□□ 0.09
CPNE1-221ENST00000462352 MAPK8IP3Q9UPT6 1336 aa15.64■□□□□ 0.09
CPNE1-221ENST00000462352 TRIM37O94972 964 aa15.63■□□□□ 0.09
CPNE1-221ENST00000462352 HSP90AB1P08238 724 aaKnown RBP15.63■□□□□ 0.09
CPNE1-221ENST00000462352 RUNDC1Q96C34 613 aa15.63■□□□□ 0.09
CPNE1-221ENST00000462352 MPRIPQ6WCQ1 1025 aa15.62■□□□□ 0.09
CPNE1-221ENST00000462352 UPF1Q92900 1129 aaKnown RBP eCLIP15.62■□□□□ 0.09
CPNE1-221ENST00000462352 DCAF5Q96JK2 942 aa15.62■□□□□ 0.09
CPNE1-221ENST00000462352 DOT1LQ8TEK3 1739 aa15.62■□□□□ 0.09
CPNE1-221ENST00000462352 MAP3K5Q99683 1374 aa15.62■□□□□ 0.09
CPNE1-221ENST00000462352 SBF2Q86WG5 1849 aa15.61■□□□□ 0.09
CPNE1-221ENST00000462352 KDM6AO15550 1401 aaPredicted RBP15.61■□□□□ 0.09
CPNE1-221ENST00000462352 TOGARAM1Q9Y4F4 1720 aa15.61■□□□□ 0.09
CPNE1-221ENST00000462352 KCNQ2O43526 872 aa15.61■□□□□ 0.09
CPNE1-221ENST00000462352 PTF1AQ7RTS3 328 aa15.61■□□□□ 0.09
CPNE1-221ENST00000462352 FAM9BQ8IZU0 186 aa15.61■□□□□ 0.09
CPNE1-221ENST00000462352 NHSQ6T4R5 1651 aa15.6■□□□□ 0.09
CPNE1-221ENST00000462352 GNAT3A8MTJ3 354 aa15.6■□□□□ 0.09
CPNE1-221ENST00000462352 PRIM1P49642 420 aaKnown RBP15.6■□□□□ 0.09
CPNE1-221ENST00000462352 NFE2L2Q16236 605 aa15.6■□□□□ 0.09
CPNE1-221ENST00000462352 SYTL4Q96C24 671 aaPredicted RBP15.6■□□□□ 0.09
CPNE1-221ENST00000462352 BCL11BQ9C0K0 894 aaPredicted RBP15.6■□□□□ 0.09
CPNE1-221ENST00000462352 CCDC125Q86Z20 511 aa15.59■□□□□ 0.09
CPNE1-221ENST00000462352 LGR6Q9HBX8 967 aa15.59■□□□□ 0.09
CPNE1-221ENST00000462352 TNS1Q9HBL0 1735 aaKnown RBP15.58■□□□□ 0.08
CPNE1-221ENST00000462352 RNMTO43148 476 aaKnown RBP15.58■□□□□ 0.08
CPNE1-221ENST00000462352 ADAMTS7Q9UKP4 1686 aa15.57■□□□□ 0.08
CPNE1-221ENST00000462352 ERVV-2B6SEH9 535 aa15.57■□□□□ 0.08
CPNE1-221ENST00000462352 SOCS7O14512 581 aa15.57■□□□□ 0.08
CPNE1-221ENST00000462352 TMPOP42166 694 aaKnown RBP15.57■□□□□ 0.08
CPNE1-221ENST00000462352 SF3B2Q13435 895 aaKnown RBP15.57■□□□□ 0.08
CPNE1-221ENST00000462352 IL17REQ8NFR9 667 aa15.57■□□□□ 0.08
CPNE1-221ENST00000462352 RRP7AQ9Y3A4 280 aaKnown RBP15.57■□□□□ 0.08
CPNE1-221ENST00000462352 SCN11AQ9UI33 1791 aa15.57■□□□□ 0.08
CPNE1-221ENST00000462352 KAT6BQ8WYB5 2073 aa15.56■□□□□ 0.08
CPNE1-221ENST00000462352 APAF1O14727 1248 aa15.56■□□□□ 0.08
CPNE1-221ENST00000462352 HTATSF1O43719 755 aaKnown RBP15.56■□□□□ 0.08
CPNE1-221ENST00000462352 APBA3O96018 575 aa15.56■□□□□ 0.08
CPNE1-221ENST00000462352 RIPK4P57078 832 aa15.56■□□□□ 0.08
CPNE1-221ENST00000462352 RTF1Q92541 710 aaKnown RBP15.56■□□□□ 0.08
CPNE1-221ENST00000462352 TMOD3Q9NYL9 352 aa15.56■□□□□ 0.08
CPNE1-221ENST00000462352 ITGB4P16144 1822 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 CEMIPQ8WUJ3 1361 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 CABP4P57796 275 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 DCTN1Q14203 1278 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 NEUROD2Q15784 382 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 MCM10Q7L590 875 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 PIGBQ92521 554 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 SLC52A2Q9HAB3 445 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 DLG5Q8TDM6 1919 aa15.55■□□□□ 0.08
CPNE1-221ENST00000462352 BTAF1O14981 1849 aa15.54■□□□□ 0.08
CPNE1-221ENST00000462352 MRC1P22897 1456 aa15.54■□□□□ 0.08
CPNE1-221ENST00000462352 NFATC2IPQ8NCF5 419 aa15.54■□□□□ 0.08
CPNE1-221ENST00000462352 VIRMAQ69YN4 1812 aaKnown RBP15.53■□□□□ 0.08
CPNE1-221ENST00000462352 BAG6P46379 1132 aa15.53■□□□□ 0.08
CPNE1-221ENST00000462352 TEFQ10587 303 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms