RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PTCH1Q13635 1447 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 PYCARDQ9ULZ3 195 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 PPRC1Q5VV67 1664 aaKnown RBP14.22□□□□□ -0.13
CPSF3-202ENST00000460593 KNDC1Q76NI1 1749 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 CEP85Q6P2H3 762 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 MYO3AQ8NEV4 1616 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 AP5Z1O43299 807 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 ARHGAP45Q92619 1136 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 CNPY2Q9Y2B0 182 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 EMILIN1Q9Y6C2 1016 aa14.22□□□□□ -0.13
CPSF3-202ENST00000460593 REC8O95072 547 aa14.21□□□□□ -0.13
CPSF3-202ENST00000460593 NFE2L2Q16236 605 aa14.21□□□□□ -0.13
CPSF3-202ENST00000460593 FCHSD2O94868 740 aa14.21□□□□□ -0.14
CPSF3-202ENST00000460593 UTP14CQ5TAP6 766 aaKnown RBP14.21□□□□□ -0.14
CPSF3-202ENST00000460593 ANO2Q9NQ90 1003 aa14.21□□□□□ -0.14
CPSF3-202ENST00000460593 NSD2O96028 1365 aa14.21□□□□□ -0.14
CPSF3-202ENST00000460593 PIK3R4Q99570 1358 aa14.21□□□□□ -0.14
CPSF3-202ENST00000460593 RIOK3O14730 519 aaKnown RBP14.2□□□□□ -0.14
CPSF3-202ENST00000460593 ANKRD44Q8N8A2 993 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 ADGRB1O14514 1584 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 LRRC7Q96NW7 1537 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 PDCL2Q8N4E4 241 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 API5Q9BZZ5 524 aaKnown RBP14.2□□□□□ -0.14
CPSF3-202ENST00000460593 CHMP4BQ9H444 224 aaKnown RBP14.2□□□□□ -0.14
CPSF3-202ENST00000460593 EXOC6BQ9Y2D4 811 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 KIF1BO60333 1816 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 NRXN1Q9ULB1 1477 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 BRPF1P55201 1214 aaPredicted RBP14.2□□□□□ -0.14
CPSF3-202ENST00000460593 GIMAP6Q6P9H5 292 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 RILPL2Q969X0 211 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 CABP1Q9NZU7 370 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 ZRANB1Q9UGI0 708 aa14.2□□□□□ -0.14
CPSF3-202ENST00000460593 ZBTB22O15209 634 aa14.19□□□□□ -0.14
CPSF3-202ENST00000460593 GNAI1P63096 354 aa14.19□□□□□ -0.14
CPSF3-202ENST00000460593 POLKQ9UBT6 870 aa14.19□□□□□ -0.14
CPSF3-202ENST00000460593 NAA30Q147X3 362 aaPredicted RBP14.19□□□□□ -0.14
CPSF3-202ENST00000460593 PRIMPOLQ96LW4 560 aa14.19□□□□□ -0.14
CPSF3-202ENST00000460593 FIBPO43427 364 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 SLC4A10Q6U841 1118 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 KCNF1Q9H3M0 494 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 MSH6P52701 1360 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 HMGN5P82970 282 aaKnown RBP14.18□□□□□ -0.14
CPSF3-202ENST00000460593 SYAP1Q96A49 352 aaPredicted RBP14.18□□□□□ -0.14
CPSF3-202ENST00000460593 IL25Q9H293 177 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 TRIM6-TRIM34B2RNG4 842 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 F6X3S4 739 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 FKBP5Q13451 457 aaPredicted RBP14.18□□□□□ -0.14
CPSF3-202ENST00000460593 SRCIN1Q9C0H9 1055 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 CHMP3Q9Y3E7 222 aa14.18□□□□□ -0.14
CPSF3-202ENST00000460593 ATP10DQ9P241 1426 aa14.17□□□□□ -0.14
CPSF3-202ENST00000460593 ZC3H13Q5T200 1668 aaKnown RBP14.17□□□□□ -0.14
CPSF3-202ENST00000460593 PRAM1Q96QH2 718 aa14.17□□□□□ -0.14
CPSF3-202ENST00000460593 PDE1AP54750 535 aa14.17□□□□□ -0.14
CPSF3-202ENST00000460593 IFT57Q9NWB7 429 aa14.17□□□□□ -0.14
CPSF3-202ENST00000460593 INO80Q9ULG1 1556 aaPredicted RBP14.16□□□□□ -0.14
CPSF3-202ENST00000460593 MAP4K4O95819 1239 aaPredicted RBP14.16□□□□□ -0.14
CPSF3-202ENST00000460593 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.16□□□□□ -0.14
CPSF3-202ENST00000460593 MIS18AQ9NYP9 233 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 USP32Q8NFA0 1604 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 FGD1P98174 961 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 TERF2IPQ9NYB0 399 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 TCHHQ07283 1943 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 ZNF853P0CG23 659 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 GTF2F1P35269 517 aaKnown RBP eCLIP14.16□□□□□ -0.14
CPSF3-202ENST00000460593 UNC5CLQ8IV45 518 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 BBXQ8WY36 941 aaPredicted RBP14.16□□□□□ -0.14
CPSF3-202ENST00000460593 ZNF428Q96B54 188 aa14.16□□□□□ -0.14
CPSF3-202ENST00000460593 FAM135BQ49AJ0 1406 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 IFT172Q9UG01 1749 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 DEPDC5O75140 1603 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 ATP7AQ04656 1500 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 CUL4AQ13619 759 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 RRS1Q15050 365 aaKnown RBP14.15□□□□□ -0.14
CPSF3-202ENST00000460593 ESYT1Q9BSJ8 1104 aa14.15□□□□□ -0.14
CPSF3-202ENST00000460593 CPA1P15085 419 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 RTL1A6NKG5 1358 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 KDM4AO75164 1064 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 MAPK8IP2Q13387 824 aaPredicted RBP14.14□□□□□ -0.15
CPSF3-202ENST00000460593 CFAP44Q96MT7 982 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 CGNQ9P2M7 1197 aaKnown RBP14.14□□□□□ -0.15
CPSF3-202ENST00000460593 VWDEQ8N2E2 1590 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 MROH1Q8NDA8 1641 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 CCDC183Q5T5S1 534 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 MCM10Q7L590 875 aa14.14□□□□□ -0.15
CPSF3-202ENST00000460593 GTPBP4Q9BZE4 634 aaKnown RBP14.13□□□□□ -0.15
CPSF3-202ENST00000460593 SPTLC3Q9NUV7 552 aa14.13□□□□□ -0.15
CPSF3-202ENST00000460593 SETBP1Q9Y6X0 1596 aa14.13□□□□□ -0.15
CPSF3-202ENST00000460593 PHF14O94880 888 aa14.13□□□□□ -0.15
CPSF3-202ENST00000460593 KIAA1524Q8TCG1 905 aa14.13□□□□□ -0.15
CPSF3-202ENST00000460593 GLI2P10070 1586 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 ARHGEF40Q8TER5 1519 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 LRMPQ12912 555 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 ZNF771Q7L3S4 317 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 G2E3Q7L622 706 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 HDGFL2Q7Z4V5 671 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 RPAP2Q8IXW5 612 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 DDX54Q8TDD1 881 aaKnown RBP14.12□□□□□ -0.15
CPSF3-202ENST00000460593 ADGRB3O60242 1522 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 PNPLA6Q8IY17 1366 aa14.12□□□□□ -0.15
CPSF3-202ENST00000460593 PTGS1P23219 599 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms