RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 AMPHP49418 695 aa25.5■■□□□ 1.67
HOXD3-204ENST00000459979 KIF7Q2M1P5 1343 aa25.49■■□□□ 1.67
HOXD3-204ENST00000459979 RRS1Q15050 365 aaKnown RBP25.48■■□□□ 1.67
HOXD3-204ENST00000459979 DDX54Q8TDD1 881 aaKnown RBP25.48■■□□□ 1.67
HOXD3-204ENST00000459979 DOT1LQ8TEK3 1739 aa25.48■■□□□ 1.67
HOXD3-204ENST00000459979 SHANK3Q9BYB0 1731 aa25.47■■□□□ 1.67
HOXD3-204ENST00000459979 ZNF827Q17R98 1081 aa25.47■■□□□ 1.67
HOXD3-204ENST00000459979 FHDC1Q9C0D6 1143 aaPredicted RBP25.47■■□□□ 1.67
HOXD3-204ENST00000459979 MTFR1LQ9H019 292 aa25.47■■□□□ 1.67
HOXD3-204ENST00000459979 LRRC4BQ9NT99 713 aa25.46■■□□□ 1.67
HOXD3-204ENST00000459979 ANKRD26Q9UPS8 1709 aa25.46■■□□□ 1.67
HOXD3-204ENST00000459979 SGIP1Q9BQI5 828 aa25.45■■□□□ 1.66
HOXD3-204ENST00000459979 TUBGCP6Q96RT7 1819 aa25.44■■□□□ 1.66
HOXD3-204ENST00000459979 NSD2O96028 1365 aa25.44■■□□□ 1.66
HOXD3-204ENST00000459979 INSRP06213 1382 aa25.44■■□□□ 1.66
HOXD3-204ENST00000459979 FLT4P35916 1363 aa25.44■■□□□ 1.66
HOXD3-204ENST00000459979 SYT17Q9BSW7 474 aa25.43■■□□□ 1.66
HOXD3-204ENST00000459979 QSER1Q2KHR3 1735 aa25.41■■□□□ 1.66
HOXD3-204ENST00000459979 MAP2P11137 1827 aaKnown RBP25.41■■□□□ 1.66
HOXD3-204ENST00000459979 KCNQ4P56696 695 aa25.4■■□□□ 1.66
HOXD3-204ENST00000459979 MEGF6O75095 1541 aa25.4■■□□□ 1.66
HOXD3-204ENST00000459979 HSP90AB2PQ58FF8 381 aa25.39■■□□□ 1.66
HOXD3-204ENST00000459979 SYTL4Q96C24 671 aaPredicted RBP25.39■■□□□ 1.66
HOXD3-204ENST00000459979 LY75O60449 1722 aa25.39■■□□□ 1.65
HOXD3-204ENST00000459979 ARXQ96QS3 562 aa25.38■■□□□ 1.65
HOXD3-204ENST00000459979 EMILIN1Q9Y6C2 1016 aa25.38■■□□□ 1.65
HOXD3-204ENST00000459979 SMG6Q86US8 1419 aaKnown RBP25.37■■□□□ 1.65
HOXD3-204ENST00000459979 CHD4Q14839 1912 aa25.37■■□□□ 1.65
HOXD3-204ENST00000459979 PRIM1P49642 420 aaKnown RBP25.37■■□□□ 1.65
HOXD3-204ENST00000459979 AKT1S1Q96B36 256 aa25.37■■□□□ 1.65
HOXD3-204ENST00000459979 POLKQ9UBT6 870 aa25.37■■□□□ 1.65
HOXD3-204ENST00000459979 KNSTRNQ9Y448 316 aa25.37■■□□□ 1.65
HOXD3-204ENST00000459979 WASHC2AQ641Q2 1341 aa25.37■■□□□ 1.65
HOXD3-204ENST00000459979 NBPF6Q5VWK0 638 aa25.35■■□□□ 1.65
HOXD3-204ENST00000459979 USHBP1Q8N6Y0 703 aa25.35■■□□□ 1.65
HOXD3-204ENST00000459979 NBPF4Q96M43 638 aa25.35■■□□□ 1.65
HOXD3-204ENST00000459979 PER1O15534 1290 aaPredicted RBP25.34■■□□□ 1.65
HOXD3-204ENST00000459979 ZCRB1Q8TBF4 217 aaKnown RBP25.34■■□□□ 1.65
HOXD3-204ENST00000459979 AMER1Q5JTC6 1135 aaPredicted RBP25.33■■□□□ 1.65
HOXD3-204ENST00000459979 SLC27A3Q5K4L6 730 aa25.33■■□□□ 1.65
HOXD3-204ENST00000459979 COL24A1Q17RW2 1714 aa25.32■■□□□ 1.64
HOXD3-204ENST00000459979 PNPLA7Q6ZV29 1317 aa25.32■■□□□ 1.64
HOXD3-204ENST00000459979 KLHL34Q8N239 644 aa25.31■■□□□ 1.64
HOXD3-204ENST00000459979 PPM1GO15355 546 aaPredicted RBP25.29■■□□□ 1.64
HOXD3-204ENST00000459979 MORC1Q86VD1 984 aa25.29■■□□□ 1.64
HOXD3-204ENST00000459979 TFCP2L1Q9NZI6 479 aa25.29■■□□□ 1.64
HOXD3-204ENST00000459979 NCAPD2Q15021 1401 aa25.29■■□□□ 1.64
HOXD3-204ENST00000459979 TNNT2P45379 298 aaPredicted RBP25.28■■□□□ 1.64
HOXD3-204ENST00000459979 ZNF784Q8NCA9 323 aaPredicted RBP25.28■■□□□ 1.64
HOXD3-204ENST00000459979 MAP3K5Q99683 1374 aa25.28■■□□□ 1.64
HOXD3-204ENST00000459979 SLC16A10Q8TF71 515 aa25.25■■□□□ 1.63
HOXD3-204ENST00000459979 CCNL1Q9UK58 526 aaPredicted RBP25.25■■□□□ 1.63
HOXD3-204ENST00000459979 NPC1L1Q9UHC9 1359 aa25.25■■□□□ 1.63
HOXD3-204ENST00000459979 UTRNP46939 3433 aa25.24■■□□□ 1.63
HOXD3-204ENST00000459979 RAPGEF4Q8WZA2 1011 aa25.24■■□□□ 1.63
HOXD3-204ENST00000459979 C5P01031 1676 aa25.23■■□□□ 1.63
HOXD3-204ENST00000459979 POLD1P28340 1107 aa25.23■■□□□ 1.63
HOXD3-204ENST00000459979 ITGB4P16144 1822 aa25.22■■□□□ 1.63
HOXD3-204ENST00000459979 TATP17735 454 aaPredicted RBP25.22■■□□□ 1.63
HOXD3-204ENST00000459979 GPR162Q16538 588 aa25.22■■□□□ 1.63
HOXD3-204ENST00000459979 EYA1Q99502 592 aa25.22■■□□□ 1.63
HOXD3-204ENST00000459979 TOGARAM1Q9Y4F4 1720 aa25.22■■□□□ 1.63
HOXD3-204ENST00000459979 TAF1LQ8IZX4 1826 aa25.21■■□□□ 1.63
HOXD3-204ENST00000459979 EIF4A2Q14240 407 aaKnown RBP25.21■■□□□ 1.63
HOXD3-204ENST00000459979 MSH5O43196 834 aa25.2■■□□□ 1.62
HOXD3-204ENST00000459979 PELP1Q8IZL8 1130 aaKnown RBP25.2■■□□□ 1.62
HOXD3-204ENST00000459979 NLGN2Q8NFZ4 835 aa25.19■■□□□ 1.62
HOXD3-204ENST00000459979 COL23A1Q86Y22 540 aaPredicted RBP25.18■■□□□ 1.62
HOXD3-204ENST00000459979 PLEKHG2Q9H7P9 1386 aa25.18■■□□□ 1.62
HOXD3-204ENST00000459979 PKD1L3Q7Z443 1732 aa25.17■■□□□ 1.62
HOXD3-204ENST00000459979 PCDH11XQ9BZA7 1347 aa25.17■■□□□ 1.62
HOXD3-204ENST00000459979 PCDH11YQ9BZA8 1340 aa25.17■■□□□ 1.62
HOXD3-204ENST00000459979 MSL1Q68DK7 614 aa25.16■■□□□ 1.62
HOXD3-204ENST00000459979 IGSF1Q8N6C5 1336 aa25.15■■□□□ 1.62
HOXD3-204ENST00000459979 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.15■■□□□ 1.62
HOXD3-204ENST00000459979 CYP27B1O15528 508 aa25.14■■□□□ 1.62
HOXD3-204ENST00000459979 CC2D1BQ5T0F9 858 aaKnown RBP25.14■■□□□ 1.62
HOXD3-204ENST00000459979 MPRIPQ6WCQ1 1025 aa25.14■■□□□ 1.62
HOXD3-204ENST00000459979 PALLDQ8WX93 1383 aa25.14■■□□□ 1.61
HOXD3-204ENST00000459979 C4BP0C0L5 1744 aa25.11■■□□□ 1.61
HOXD3-204ENST00000459979 MTHFSP49914 203 aa25.1■■□□□ 1.61
HOXD3-204ENST00000459979 SPG7Q9UQ90 795 aa25.1■■□□□ 1.61
HOXD3-204ENST00000459979 IL13P35225 146 aa25.09■■□□□ 1.61
HOXD3-204ENST00000459979 NKX1-1Q15270 411 aaPredicted RBP25.08■■□□□ 1.61
HOXD3-204ENST00000459979 UBR3Q6ZT12 1888 aa25.08■■□□□ 1.61
HOXD3-204ENST00000459979 YBX3P16989 372 aaKnown RBP eCLIP25.07■■□□□ 1.6
HOXD3-204ENST00000459979 SMIM5Q71RC9 77 aa25.06■■□□□ 1.6
HOXD3-204ENST00000459979 KDRP35968 1356 aa25.05■■□□□ 1.6
HOXD3-204ENST00000459979 AMIGO3Q86WK7 504 aa25.05■■□□□ 1.6
HOXD3-204ENST00000459979 PIGBQ92521 554 aa25.05■■□□□ 1.6
HOXD3-204ENST00000459979 C1QTNF8P60827 252 aa25.03■■□□□ 1.6
HOXD3-204ENST00000459979 GOLGB1Q14789 3259 aaKnown RBP25.02■■□□□ 1.6
HOXD3-204ENST00000459979 PHF14O94880 888 aa25.02■■□□□ 1.6
HOXD3-204ENST00000459979 SMARCC1Q92922 1105 aaPredicted RBP25.02■■□□□ 1.6
HOXD3-204ENST00000459979 AK7Q96M32 723 aa25.02■■□□□ 1.6
HOXD3-204ENST00000459979 SENP3-EIF4A1A0A087X0R7 540 aa25.01■■□□□ 1.59
HOXD3-204ENST00000459979 IFNL2Q8IZJ0 200 aa25.01■■□□□ 1.59
HOXD3-204ENST00000459979 PHKG2P15735 406 aa25■■□□□ 1.59
HOXD3-204ENST00000459979 AMOTQ4VCS5 1084 aa25■■□□□ 1.59
HOXD3-204ENST00000459979 SULT6B1Q6IMI4 303 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms