RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 ZNF526Q8TF50 670 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 FGD5Q6ZNL6 1462 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 PODNQ7Z5L7 613 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 PNISRQ8TF01 805 aaKnown RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 NBPF1Q3BBV0 1214 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 CCAR1Q8IX12 1150 aaKnown RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 SYNJ2O15056 1496 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 SEPT6Q14141 434 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 LRRC27Q9C0I9 530 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 ATL3Q6DD88 541 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 PABPN1Q86U42 306 aaKnown RBP eCLIP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC110Q8TBZ0 833 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 SOS1Q07889 1333 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 WDR66Q8TBY9 1149 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 GZF1Q9H116 711 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 CENPHQ9H3R5 247 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 USP25Q9UHP3 1055 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 A0A1B0GUA9 196 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 CKAP4Q07065 602 aaKnown RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 AMER1Q5JTC6 1135 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 MYH8P13535 1937 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 RPGRIP1LQ68CZ1 1315 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 IFIT2P09913 472 aaKnown RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 HSP90AB2PQ58FF8 381 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC150Q8NCX0 1101 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 TRAK2O60296 914 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 VIMP08670 466 aaKnown RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 PKD2Q13563 968 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 CTCFLQ8NI51 663 aaPredicted RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 NFKBIBQ15653 356 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 WWC2Q6AWC2 1192 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 ALS2CR12Q96Q35 445 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 PEG3Q9GZU2 1588 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 CETN1Q12798 172 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 ZBTB17Q13105 803 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 USP37Q86T82 979 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 SPC24Q8NBT2 197 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 UBE2Q2Q8WVN8 375 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 CTAGE1Q96RT6 745 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 KIF5CO60282 957 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 SF3B2Q13435 895 aaKnown RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 WDR78Q5VTH9 848 aa6.09□□□□□ -1.43
CSMD3-204ENST00000455883 G3BP1Q13283 466 aaKnown RBP eCLIP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 CLASRPQ8N2M8 674 aaKnown RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 ZC3H15Q8WU90 426 aaKnown RBP6.09□□□□□ -1.43
CSMD3-204ENST00000455883 MYH7P12883 1935 aa6.09□□□□□ -1.44
CSMD3-204ENST00000455883 MYH15Q9Y2K3 1946 aa6.09□□□□□ -1.44
CSMD3-204ENST00000455883 RTN4Q9NQC3 1192 aaKnown RBP6.09□□□□□ -1.44
CSMD3-204ENST00000455883 GNL3LQ9NVN8 582 aaKnown RBP6.09□□□□□ -1.44
CSMD3-204ENST00000455883 C9orf78Q9NZ63 289 aaPredicted RBP6.09□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC175P0C221 793 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 PPP2R5EQ16537 467 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 LRRC45Q96CN5 670 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 RBM33Q96EV2 1170 aaKnown RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 HDAC9Q9UKV0 1011 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 DNMBPQ6XZF7 1577 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 RBM27Q9P2N5 1060 aaKnown RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 U3KPZ7 1027 aaPredicted RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 UNC13AQ9UPW8 1703 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 BUB1BO60566 1050 aaPredicted RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 ARHGAP29Q52LW3 1261 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC94Q9BW85 323 aaPredicted RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 NUP160Q12769 1436 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC181Q5TID7 509 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 COG3Q96JB2 828 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 NACAP1Q9BZK3 213 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 NOL7Q9UMY1 257 aaKnown RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 SYNJ1O43426 1573 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 GRPEL1Q9HAV7 217 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 CADPSQ9ULU8 1353 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 KRT222Q8N1A0 295 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 GAS2L2Q8NHY3 880 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 PAIP2Q9BPZ3 127 aaKnown RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 MYH3P11055 1940 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 KIF4AO95239 1232 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 TBC1D2BQ9UPU7 963 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 TTC21AQ8NDW8 1320 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 TEX14Q8IWB6 1497 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 LIG1P18858 919 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 SPAG1Q07617 926 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 B4GALNT4Q76KP1 1039 aa6.08□□□□□ -1.44
CSMD3-204ENST00000455883 CPSF2Q9P2I0 782 aaKnown RBP6.08□□□□□ -1.44
CSMD3-204ENST00000455883 PCMTD1Q96MG8 357 aaPredicted RBP6.07□□□□□ -1.44
CSMD3-204ENST00000455883 EPB41L2O43491 1005 aaKnown RBP6.07□□□□□ -1.44
CSMD3-204ENST00000455883 PPP1R2P41236 205 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 TRIM34Q9BYJ4 488 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 PIP4K2BP78356 416 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 CCDC183Q5T5S1 534 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 MKRN1Q9UHC7 482 aaKnown RBP6.07□□□□□ -1.44
CSMD3-204ENST00000455883 IQGAP2Q13576 1575 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 ANKRD50Q9ULJ7 1429 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 C1orf141Q5JVX7 400 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 ZHX1Q9UKY1 873 aaPredicted RBP6.07□□□□□ -1.44
CSMD3-204ENST00000455883 RABGAP1Q9Y3P9 1069 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 HSPA4P34932 840 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 RPGRIP1Q96KN7 1286 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 SLMAPQ14BN4 828 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 LAMC3Q9Y6N6 1575 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 GAPVD1Q14C86 1478 aa6.07□□□□□ -1.44
CSMD3-204ENST00000455883 C11orf95C9JLR9 678 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms