RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PARP4Q9UKK3 1724 aaKnown RBP20.94■□□□□ 0.94
USP40-206ENST00000443711 DISP2A7MBM2 1401 aa20.94■□□□□ 0.94
USP40-206ENST00000443711 ONECUT3O60422 494 aaPredicted RBP20.93■□□□□ 0.94
USP40-206ENST00000443711 PLEKHG2Q9H7P9 1386 aa20.93■□□□□ 0.94
USP40-206ENST00000443711 MEGF6O75095 1541 aa20.93■□□□□ 0.94
USP40-206ENST00000443711 PLEKHO1Q53GL0 409 aaPredicted RBP20.92■□□□□ 0.94
USP40-206ENST00000443711 RUNDC1Q96C34 613 aa20.92■□□□□ 0.94
USP40-206ENST00000443711 PLEKHF1Q96S99 279 aa20.92■□□□□ 0.94
USP40-206ENST00000443711 OVOS2A0A0G2JMS6 1433 aa20.91■□□□□ 0.94
USP40-206ENST00000443711 AMOTQ4VCS5 1084 aa20.91■□□□□ 0.94
USP40-206ENST00000443711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.91■□□□□ 0.94
USP40-206ENST00000443711 MAPK8IP3Q9UPT6 1336 aa20.91■□□□□ 0.94
USP40-206ENST00000443711 SPG7Q9UQ90 795 aa20.91■□□□□ 0.94
USP40-206ENST00000443711 A0A0G2JS52 829 aa20.9■□□□□ 0.94
USP40-206ENST00000443711 EXOC5O00471 708 aa20.9■□□□□ 0.94
USP40-206ENST00000443711 MYT1Q01538 1121 aa20.9■□□□□ 0.94
USP40-206ENST00000443711 CCDC146Q8IYE0 955 aa20.9■□□□□ 0.94
USP40-206ENST00000443711 ZCRB1Q8TBF4 217 aaKnown RBP20.9■□□□□ 0.94
USP40-206ENST00000443711 PHACTR3Q96KR7 559 aa20.89■□□□□ 0.93
USP40-206ENST00000443711 DDB1Q16531 1140 aa20.88■□□□□ 0.93
USP40-206ENST00000443711 THSD7AQ9UPZ6 1657 aa20.88■□□□□ 0.93
USP40-206ENST00000443711 PKD1L3Q7Z443 1732 aa20.87■□□□□ 0.93
USP40-206ENST00000443711 SEPT12Q8IYM1 358 aa20.87■□□□□ 0.93
USP40-206ENST00000443711 MTHFSDQ2M296 383 aaKnown RBP20.86■□□□□ 0.93
USP40-206ENST00000443711 GAS2L2Q8NHY3 880 aa20.86■□□□□ 0.93
USP40-206ENST00000443711 ZNF530Q6P9A1 599 aaPredicted RBP20.85■□□□□ 0.93
USP40-206ENST00000443711 PCDH11XQ9BZA7 1347 aa20.84■□□□□ 0.93
USP40-206ENST00000443711 PCDH11YQ9BZA8 1340 aa20.84■□□□□ 0.93
USP40-206ENST00000443711 LRRC37A3O60309 1634 aa20.84■□□□□ 0.93
USP40-206ENST00000443711 TNS2Q63HR2 1409 aa20.84■□□□□ 0.93
USP40-206ENST00000443711 PDE3BQ13370 1112 aa20.83■□□□□ 0.93
USP40-206ENST00000443711 NFE2L2Q16236 605 aa20.83■□□□□ 0.93
USP40-206ENST00000443711 C1orf141Q5JVX7 400 aa20.83■□□□□ 0.93
USP40-206ENST00000443711 DDX54Q8TDD1 881 aaKnown RBP20.83■□□□□ 0.93
USP40-206ENST00000443711 APAF1O14727 1248 aa20.82■□□□□ 0.92
USP40-206ENST00000443711 TMPOP42166 694 aaKnown RBP20.82■□□□□ 0.92
USP40-206ENST00000443711 IFNL2Q8IZJ0 200 aa20.82■□□□□ 0.92
USP40-206ENST00000443711 SHANK3Q9BYB0 1731 aa20.81■□□□□ 0.92
USP40-206ENST00000443711 CYP27B1O15528 508 aa20.81■□□□□ 0.92
USP40-206ENST00000443711 AKAP4Q5JQC9 854 aa20.81■□□□□ 0.92
USP40-206ENST00000443711 BRWD3Q6RI45 1802 aa20.81■□□□□ 0.92
USP40-206ENST00000443711 DLG5Q8TDM6 1919 aa20.8■□□□□ 0.92
USP40-206ENST00000443711 SOCS7O14512 581 aa20.8■□□□□ 0.92
USP40-206ENST00000443711 PHKG2P15735 406 aa20.8■□□□□ 0.92
USP40-206ENST00000443711 GNAT3A8MTJ3 354 aa20.79■□□□□ 0.92
USP40-206ENST00000443711 RIPK4P57078 832 aa20.79■□□□□ 0.92
USP40-206ENST00000443711 RGS12O14924 1447 aa20.78■□□□□ 0.92
USP40-206ENST00000443711 HSP90AB1P08238 724 aaKnown RBP20.78■□□□□ 0.92
USP40-206ENST00000443711 NEUROD2Q15784 382 aa20.78■□□□□ 0.92
USP40-206ENST00000443711 KRT27Q7Z3Y8 459 aa20.78■□□□□ 0.92
USP40-206ENST00000443711 MARCH10Q8NA82 808 aaPredicted RBP20.78■□□□□ 0.92
USP40-206ENST00000443711 RRP7AQ9Y3A4 280 aaKnown RBP20.78■□□□□ 0.92
USP40-206ENST00000443711 MAP3K5Q99683 1374 aa20.77■□□□□ 0.92
USP40-206ENST00000443711 HTATSF1O43719 755 aaKnown RBP20.77■□□□□ 0.92
USP40-206ENST00000443711 NKX1-1Q15270 411 aaPredicted RBP20.77■□□□□ 0.92
USP40-206ENST00000443711 NGEFQ8N5V2 710 aa20.77■□□□□ 0.92
USP40-206ENST00000443711 LMOD3Q0VAK6 560 aa20.76■□□□□ 0.91
USP40-206ENST00000443711 NCBP3Q53F19 620 aaKnown RBP20.76■□□□□ 0.91
USP40-206ENST00000443711 RTF1Q92541 710 aaKnown RBP20.76■□□□□ 0.91
USP40-206ENST00000443711 KAT6BQ8WYB5 2073 aa20.75■□□□□ 0.91
USP40-206ENST00000443711 DCAF5Q96JK2 942 aa20.75■□□□□ 0.91
USP40-206ENST00000443711 MPRIPQ6WCQ1 1025 aa20.74■□□□□ 0.91
USP40-206ENST00000443711 VIRMAQ69YN4 1812 aaKnown RBP20.74■□□□□ 0.91
USP40-206ENST00000443711 SENP3-EIF4A1A0A087X0R7 540 aa20.73■□□□□ 0.91
USP40-206ENST00000443711 RNMTO43148 476 aaKnown RBP20.72■□□□□ 0.91
USP40-206ENST00000443711 CCDC27Q2M243 656 aa20.72■□□□□ 0.91
USP40-206ENST00000443711 TRIM35Q9UPQ4 493 aa20.72■□□□□ 0.91
USP40-206ENST00000443711 SCN11AQ9UI33 1791 aa20.72■□□□□ 0.91
USP40-206ENST00000443711 HNRNPUQ00839 825 aaKnown RBP eCLIP20.71■□□□□ 0.91
USP40-206ENST00000443711 IL17REQ8NFR9 667 aa20.71■□□□□ 0.91
USP40-206ENST00000443711 LGR6Q9HBX8 967 aa20.71■□□□□ 0.91
USP40-206ENST00000443711 SALL2Q9Y467 1007 aaPredicted RBP20.71■□□□□ 0.91
USP40-206ENST00000443711 FAM182BQ5T319 152 aa20.7■□□□□ 0.9
USP40-206ENST00000443711 FAM196AQ6ZSG2 479 aa20.7■□□□□ 0.9
USP40-206ENST00000443711 MCM10Q7L590 875 aa20.7■□□□□ 0.9
USP40-206ENST00000443711 BCL9O00512 1426 aa20.7■□□□□ 0.9
USP40-206ENST00000443711 ERVV-2B6SEH9 535 aa20.69■□□□□ 0.9
USP40-206ENST00000443711 DCTN1Q14203 1278 aa20.69■□□□□ 0.9
USP40-206ENST00000443711 ADAMTS7Q9UKP4 1686 aa20.69■□□□□ 0.9
USP40-206ENST00000443711 KDM6AO15550 1401 aaPredicted RBP20.69■□□□□ 0.9
USP40-206ENST00000443711 WWC1Q8IX03 1113 aa20.68■□□□□ 0.9
USP40-206ENST00000443711 TEFQ10587 303 aa20.67■□□□□ 0.9
USP40-206ENST00000443711 CEMIPQ8WUJ3 1361 aa20.67■□□□□ 0.9
USP40-206ENST00000443711 CABP4P57796 275 aa20.66■□□□□ 0.9
USP40-206ENST00000443711 CALD1Q05682 793 aaKnown RBP20.66■□□□□ 0.9
USP40-206ENST00000443711 DOT1LQ8TEK3 1739 aa20.66■□□□□ 0.9
USP40-206ENST00000443711 ITGB4P16144 1822 aa20.66■□□□□ 0.9
USP40-206ENST00000443711 SBF2Q86WG5 1849 aa20.65■□□□□ 0.9
USP40-206ENST00000443711 TOGARAM1Q9Y4F4 1720 aa20.65■□□□□ 0.9
USP40-206ENST00000443711 ACSBG1Q96GR2 724 aa20.65■□□□□ 0.9
USP40-206ENST00000443711 THUMPD2Q9BTF0 503 aaKnown RBP20.65■□□□□ 0.9
USP40-206ENST00000443711 SLC52A2Q9HAB3 445 aa20.65■□□□□ 0.9
USP40-206ENST00000443711 PRIM1P49642 420 aaKnown RBP20.64■□□□□ 0.89
USP40-206ENST00000443711 WDR63Q8IWG1 891 aa20.64■□□□□ 0.89
USP40-206ENST00000443711 TAF7Q15545 349 aaPredicted RBP20.63■□□□□ 0.89
USP40-206ENST00000443711 NFATC2IPQ8NCF5 419 aa20.63■□□□□ 0.89
USP40-206ENST00000443711 SYTL4Q96C24 671 aaPredicted RBP20.63■□□□□ 0.89
USP40-206ENST00000443711 TMOD3Q9NYL9 352 aa20.63■□□□□ 0.89
USP40-206ENST00000443711 MRC1P22897 1456 aa20.62■□□□□ 0.89
USP40-206ENST00000443711 ZNF521Q96K83 1311 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms