RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 CAMTA1Q9Y6Y1 1673 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 CSB-PGBD3P0DP91 1061 aa11.02□□□□□ -0.65
VPS50-204ENST00000438395 MKRN3Q13064 507 aaKnown RBP11.02□□□□□ -0.65
VPS50-204ENST00000438395 EZH2Q15910 746 aaKnown RBP11.02□□□□□ -0.65
VPS50-204ENST00000438395 NBPF14Q5TI25 921 aa11.02□□□□□ -0.65
VPS50-204ENST00000438395 KCNH5Q8NCM2 988 aa11.02□□□□□ -0.65
VPS50-204ENST00000438395 TTC21AQ8NDW8 1320 aa11.01□□□□□ -0.65
VPS50-204ENST00000438395 LRP5O75197 1615 aa11.01□□□□□ -0.65
VPS50-204ENST00000438395 OVOS2A0A0G2JMS6 1433 aa11.01□□□□□ -0.65
VPS50-204ENST00000438395 OVOS2A0A0J9YW53 1432 aa11.01□□□□□ -0.65
VPS50-204ENST00000438395 OVOS2Q6IE36 1432 aa11.01□□□□□ -0.65
VPS50-204ENST00000438395 TRPM1Q7Z4N2 1603 aa11□□□□□ -0.65
VPS50-204ENST00000438395 DDB1Q16531 1140 aa11□□□□□ -0.65
VPS50-204ENST00000438395 CAMKK2Q96RR4 588 aa11□□□□□ -0.65
VPS50-204ENST00000438395 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
VPS50-204ENST00000438395 LMO7Q8WWI1 1683 aa11□□□□□ -0.65
VPS50-204ENST00000438395 TTC21BQ7Z4L5 1316 aa11□□□□□ -0.65
VPS50-204ENST00000438395 KTN1Q86UP2 1357 aaKnown RBP11□□□□□ -0.65
VPS50-204ENST00000438395 TONSLQ96HA7 1378 aa11□□□□□ -0.65
VPS50-204ENST00000438395 CPSF1Q10570 1443 aaKnown RBP11□□□□□ -0.65
VPS50-204ENST00000438395 SLIT3O75094 1523 aa10.99□□□□□ -0.65
VPS50-204ENST00000438395 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
VPS50-204ENST00000438395 CDCA7Q9BWT1 371 aaPredicted RBP10.99□□□□□ -0.65
VPS50-204ENST00000438395 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS50-204ENST00000438395 WDR17Q8IZU2 1322 aa10.99□□□□□ -0.65
VPS50-204ENST00000438395 TNS1Q9HBL0 1735 aaKnown RBP10.98□□□□□ -0.65
VPS50-204ENST00000438395 RIOK3O14730 519 aaKnown RBP10.98□□□□□ -0.65
VPS50-204ENST00000438395 HDGFL2Q7Z4V5 671 aaPredicted RBP10.98□□□□□ -0.65
VPS50-204ENST00000438395 TMC1Q8TDI8 760 aa10.98□□□□□ -0.65
VPS50-204ENST00000438395 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS50-204ENST00000438395 PIK3C2AO00443 1686 aa10.96□□□□□ -0.65
VPS50-204ENST00000438395 SBNO2Q9Y2G9 1366 aa10.96□□□□□ -0.65
VPS50-204ENST00000438395 ARHGEF25Q86VW2 580 aa10.96□□□□□ -0.65
VPS50-204ENST00000438395 TERF2IPQ9NYB0 399 aa10.96□□□□□ -0.65
VPS50-204ENST00000438395 PPP1R1BQ9UD71 204 aaPredicted RBP10.96□□□□□ -0.65
VPS50-204ENST00000438395 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.95□□□□□ -0.66
VPS50-204ENST00000438395 DPY19L2Q6NUT2 758 aa10.95□□□□□ -0.66
VPS50-204ENST00000438395 ZFP91Q96JP5 570 aaPredicted RBP10.95□□□□□ -0.66
VPS50-204ENST00000438395 CARD10Q9BWT7 1032 aa10.95□□□□□ -0.66
VPS50-204ENST00000438395 CCDC7Q96M83 1385 aa10.94□□□□□ -0.66
VPS50-204ENST00000438395 ECM2O94769 699 aaPredicted RBP10.94□□□□□ -0.66
VPS50-204ENST00000438395 BCL11BQ9C0K0 894 aaPredicted RBP10.94□□□□□ -0.66
VPS50-204ENST00000438395 NLRP2Q9NX02 1062 aa10.94□□□□□ -0.66
VPS50-204ENST00000438395 AXIN2Q9Y2T1 843 aa10.94□□□□□ -0.66
VPS50-204ENST00000438395 PARP4Q9UKK3 1724 aaKnown RBP10.94□□□□□ -0.66
VPS50-204ENST00000438395 EXOC5O00471 708 aa10.93□□□□□ -0.66
VPS50-204ENST00000438395 EFCAB3Q8N7B9 438 aa10.93□□□□□ -0.66
VPS50-204ENST00000438395 SPON1Q9HCB6 807 aa10.93□□□□□ -0.66
VPS50-204ENST00000438395 LRRC37A3O60309 1634 aa10.92□□□□□ -0.66
VPS50-204ENST00000438395 NME9Q86XW9 330 aa10.92□□□□□ -0.66
VPS50-204ENST00000438395 SLAIN1Q8ND83 568 aa10.92□□□□□ -0.66
VPS50-204ENST00000438395 ABCC6O95255 1503 aa10.92□□□□□ -0.66
VPS50-204ENST00000438395 EDC4Q6P2E9 1401 aaKnown RBP10.92□□□□□ -0.66
VPS50-204ENST00000438395 NFAT5O94916 1531 aa10.91□□□□□ -0.66
VPS50-204ENST00000438395 SLC24A1O60721 1099 aa10.91□□□□□ -0.66
VPS50-204ENST00000438395 MARCH10Q8NA82 808 aaPredicted RBP10.91□□□□□ -0.66
VPS50-204ENST00000438395 TNS2Q63HR2 1409 aa10.91□□□□□ -0.66
VPS50-204ENST00000438395 USP31Q70CQ4 1352 aa10.9□□□□□ -0.66
VPS50-204ENST00000438395 NINLQ9Y2I6 1382 aa10.9□□□□□ -0.66
VPS50-204ENST00000438395 ERBB3P21860 1342 aa10.9□□□□□ -0.66
VPS50-204ENST00000438395 PLSCR1O15162 318 aa10.9□□□□□ -0.66
VPS50-204ENST00000438395 FAM163AQ96GL9 167 aaPredicted RBP10.9□□□□□ -0.66
VPS50-204ENST00000438395 SLC12A5Q9H2X9 1139 aa10.9□□□□□ -0.66
VPS50-204ENST00000438395 AKAP12Q02952 1782 aa10.9□□□□□ -0.67
VPS50-204ENST00000438395 RREB1Q92766 1687 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 RGL2O15211 777 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 KCNQ2O43526 872 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 ANKRD24Q8TF21 1146 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 STK32BQ9NY57 414 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 BCL9O00512 1426 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 A0A1W2PP64 1363 aa10.89□□□□□ -0.67
VPS50-204ENST00000438395 IL2RBP14784 551 aa10.88□□□□□ -0.67
VPS50-204ENST00000438395 NUP188Q5SRE5 1749 aa10.88□□□□□ -0.67
VPS50-204ENST00000438395 LCE2DQ5TA82 110 aaPredicted RBP10.88□□□□□ -0.67
VPS50-204ENST00000438395 COG3Q96JB2 828 aa10.88□□□□□ -0.67
VPS50-204ENST00000438395 PUS7Q96PZ0 661 aaKnown RBP10.88□□□□□ -0.67
VPS50-204ENST00000438395 COL18A1P39060 1754 aa10.88□□□□□ -0.67
VPS50-204ENST00000438395 MON2Q7Z3U7 1717 aa10.87□□□□□ -0.67
VPS50-204ENST00000438395 PEAK1Q9H792 1746 aa10.87□□□□□ -0.67
VPS50-204ENST00000438395 ANO8Q9HCE9 1232 aaPredicted RBP10.87□□□□□ -0.67
VPS50-204ENST00000438395 ST20-MTHFSA0A0A6YYL1 179 aa10.86□□□□□ -0.67
VPS50-204ENST00000438395 AMPHP49418 695 aa10.86□□□□□ -0.67
VPS50-204ENST00000438395 TXNRD1Q16881 649 aa10.86□□□□□ -0.67
VPS50-204ENST00000438395 LTV1Q96GA3 475 aaPredicted RBP10.86□□□□□ -0.67
VPS50-204ENST00000438395 CD163L1Q9NR16 1453 aa10.86□□□□□ -0.67
VPS50-204ENST00000438395 RGPD3A6NKT7 1758 aaPredicted RBP10.85□□□□□ -0.67
VPS50-204ENST00000438395 RGPD4Q7Z3J3 1758 aa10.85□□□□□ -0.67
VPS50-204ENST00000438395 PTF1AQ7RTS3 328 aa10.85□□□□□ -0.67
VPS50-204ENST00000438395 ACSBG1Q96GR2 724 aa10.85□□□□□ -0.67
VPS50-204ENST00000438395 WNK3Q9BYP7 1800 aa10.85□□□□□ -0.67
VPS50-204ENST00000438395 ZBTB7AO95365 584 aa10.84□□□□□ -0.67
VPS50-204ENST00000438395 TMF1P82094 1093 aa10.84□□□□□ -0.67
VPS50-204ENST00000438395 CDCA8Q53HL2 280 aa10.84□□□□□ -0.67
VPS50-204ENST00000438395 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.84□□□□□ -0.67
VPS50-204ENST00000438395 USP47Q96K76 1375 aa10.83□□□□□ -0.68
VPS50-204ENST00000438395 POTEMA6NI47 508 aa10.83□□□□□ -0.68
VPS50-204ENST00000438395 YY1P25490 414 aa10.83□□□□□ -0.68
VPS50-204ENST00000438395 TRIM26Q12899 539 aaPredicted RBP10.83□□□□□ -0.68
VPS50-204ENST00000438395 DDX54Q8TDD1 881 aaKnown RBP10.83□□□□□ -0.68
VPS50-204ENST00000438395 IP6K1Q92551 441 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms