RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 U2AF2P26368 475 aaKnown RBP eCLIP7.79□□□□□ -1.16
MCF2-205ENST00000437564 RWDD2BP57060 319 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 MCM6Q14566 821 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 RASA3Q14644 834 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 BMS1Q14692 1282 aaKnown RBP7.79□□□□□ -1.16
MCF2-205ENST00000437564 LZTS2Q9BRK4 669 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 BCL2L12Q9HB09 334 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 PPME1Q9Y570 386 aa7.79□□□□□ -1.16
MCF2-205ENST00000437564 TMCO5BA8MYB1 307 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 MYO1CO00159 1063 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 INHBEP58166 350 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 SRPK2P78362 688 aaKnown RBP7.78□□□□□ -1.16
MCF2-205ENST00000437564 TRIM74Q86UV6 250 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 TRIM73Q86UV7 250 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 SIN3AQ96ST3 1273 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 SH3GL3Q99963 347 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 MMTAG2Q9BU76 263 aaKnown RBP7.78□□□□□ -1.16
MCF2-205ENST00000437564 GZF1Q9H116 711 aaPredicted RBP7.78□□□□□ -1.16
MCF2-205ENST00000437564 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.78□□□□□ -1.16
MCF2-205ENST00000437564 RBM27Q9P2N5 1060 aaKnown RBP7.78□□□□□ -1.16
MCF2-205ENST00000437564 NUDCQ9Y266 331 aa7.78□□□□□ -1.16
MCF2-205ENST00000437564 MARCH6O60337 910 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 KLHL10Q6JEL2 608 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 MAMSTRQ6ZN01 415 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 BARGINQ6ZT62 677 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 EFCAB13Q8IY85 973 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 CFAP53Q96M91 514 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 GOPCQ9HD26 462 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 UTP6Q9NYH9 597 aaKnown RBP7.77□□□□□ -1.17
MCF2-205ENST00000437564 MAGEC2Q9UBF1 373 aaPredicted RBP7.77□□□□□ -1.17
MCF2-205ENST00000437564 CTNNA3Q9UI47 895 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 CCDC144AA2RUR9 1427 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 CTIFO43310 598 aaKnown RBP7.77□□□□□ -1.17
MCF2-205ENST00000437564 C21orf2O43822 256 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 FAM163BP0C2L3 166 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 NAT1P18440 290 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 ICA1Q05084 483 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 CCDC30Q5VVM6 783 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 KIF2CQ99661 725 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 IQCGQ9H095 443 aaKnown RBP7.77□□□□□ -1.17
MCF2-205ENST00000437564 RMI1Q9H9A7 625 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 CPSF2Q9P2I0 782 aaKnown RBP7.77□□□□□ -1.17
MCF2-205ENST00000437564 PCDHB8Q9UN66 801 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 ZNF232Q9UNY5 417 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 PCDHB13Q9Y5F0 798 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 PCDHGA4Q9Y5G9 962 aa7.77□□□□□ -1.17
MCF2-205ENST00000437564 KIAA1107Q9UPP5 1409 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 IPO5O00410 1097 aaKnown RBP7.76□□□□□ -1.17
MCF2-205ENST00000437564 IMPDH2P12268 514 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 STAG1Q8WVM7 1258 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 TMX1Q9H3N1 280 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 ERBB3P21860 1342 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 NPC1L1Q9UHC9 1359 aa7.76□□□□□ -1.17
MCF2-205ENST00000437564 CDKL5O76039 1030 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 TPM1P09493 284 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 MAGEA9P43362 315 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 MCCD1P59942 119 aaPredicted RBP7.75□□□□□ -1.17
MCF2-205ENST00000437564 FILIP1LQ4L180 1135 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 TTLL5Q6EMB2 1281 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 CCDC26Q8TAB7 109 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 C22orf23Q9BZE7 217 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 FAM53CQ9NYF3 392 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 CHMP5Q9NZZ3 219 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 POLKQ9UBT6 870 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 ZRANB1Q9UGI0 708 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 ERICH4A6NGS2 130 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 GJC2Q5T442 439 aaPredicted RBP7.75□□□□□ -1.17
MCF2-205ENST00000437564 RPUSD2Q8IZ73 545 aaKnown RBP7.75□□□□□ -1.17
MCF2-205ENST00000437564 C17orf50Q8WW18 174 aa7.75□□□□□ -1.17
MCF2-205ENST00000437564 SYAP1Q96A49 352 aaPredicted RBP7.75□□□□□ -1.17
MCF2-205ENST00000437564 CCDC85AQ96PX6 553 aaPredicted RBP7.75□□□□□ -1.17
MCF2-205ENST00000437564 SF3B2Q13435 895 aaKnown RBP7.74□□□□□ -1.17
MCF2-205ENST00000437564 TSGA10IPQ3SY00 556 aa7.74□□□□□ -1.17
MCF2-205ENST00000437564 TEX35Q5T0J7 233 aa7.74□□□□□ -1.17
MCF2-205ENST00000437564 MMS22LQ6ZRQ5 1243 aa7.74□□□□□ -1.17
MCF2-205ENST00000437564 RBM12BQ8IXT5 1001 aaKnown RBP7.74□□□□□ -1.17
MCF2-205ENST00000437564 FBXO22Q8NEZ5 403 aa7.74□□□□□ -1.17
MCF2-205ENST00000437564 GPBP1L1Q9HC44 474 aaPredicted RBP7.74□□□□□ -1.17
MCF2-205ENST00000437564 ATG3Q9NT62 314 aa7.74□□□□□ -1.17
MCF2-205ENST00000437564 RSF1Q96T23 1441 aaPredicted RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 SMC2O95347 1197 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 RBBP5Q15291 538 aaKnown RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 MFSD4BQ5TF39 518 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 C10orf67Q8IYJ2 551 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 PPM1EQ8WY54 764 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 SLX1AQ9BQ83 275 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 POLR3CQ9BUI4 534 aaPredicted RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 SLKQ9H2G2 1235 aaPredicted RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 ARHGEF10LQ9HCE6 1279 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 SUGT1Q9Y2Z0 365 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 DHX29Q7Z478 1369 aaKnown RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 KTN1Q86UP2 1357 aaKnown RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 SPAG9O60271 1321 aaKnown RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 NCKAP5LQ9HCH0 1330 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 PPFIA4O75335 1185 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 BAG4O95429 457 aaKnown RBP7.73□□□□□ -1.17
MCF2-205ENST00000437564 FLT3P36888 993 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 USP8P40818 1118 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 IFT88Q13099 833 aa7.73□□□□□ -1.17
MCF2-205ENST00000437564 TMED1Q13445 227 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms