RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 NEBLO76041 1014 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 CSPG5O95196 566 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 IBSPP21815 317 aaPredicted RBP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 ADD2P35612 726 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 DBN1Q16643 649 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 HDGFL2Q7Z4V5 671 aaPredicted RBP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 TBC1D31Q96DN5 1066 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 PPCSQ9HAB8 311 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 KIF1CO43896 1103 aaKnown RBP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 RDXP35241 583 aaKnown RBP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 GTF2F1P35269 517 aaKnown RBP eCLIP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 PRPF4BQ13523 1007 aaKnown RBP6.4□□□□□ -1.38
PTPN4-203ENST00000430976 DONSONQ9NYP3 566 aa6.4□□□□□ -1.38
PTPN4-203ENST00000430976 DPH6Q7L8W6 267 aa6.4□□□□□ -1.39
PTPN4-203ENST00000430976 MORC1Q86VD1 984 aa6.4□□□□□ -1.39
PTPN4-203ENST00000430976 TRIM6Q9C030 488 aaPredicted RBP6.4□□□□□ -1.39
PTPN4-203ENST00000430976 CCDC194A0A1B0GVG4 234 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 MYLK4Q86YV6 388 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 TMCO5AQ8N6Q1 288 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 UIMC1Q96RL1 719 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 PANK2Q9BZ23 570 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 TMEM165Q9HC07 324 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 PLEKHG3A1L390 1219 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 TCF3P15923 654 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 KCNA2P16389 499 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 ATP6V1AP38606 617 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 TNPO1Q92973 898 aaKnown RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 GBP4Q96PP9 640 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 HIP1RO75146 1068 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 SART3Q15020 963 aaKnown RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 GIPC2Q8TF65 315 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 POM121Q96HA1 1249 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 RWDD1Q9H446 243 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 U3KPZ7 1027 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 SENP3-EIF4A1A0A087X0R7 540 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 BRD3Q15059 726 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 TTLL5Q6EMB2 1281 aa6.39□□□□□ -1.39
PTPN4-203ENST00000430976 KIAA1522Q9P206 1035 aaPredicted RBP6.39□□□□□ -1.39
PTPN4-203ENST00000430976 RBM47A0AV96 593 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 CCAR1Q8IX12 1150 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 KLHL23Q8NBE8 558 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 ANKRD20A12PQ8NF67 263 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 RASSF4Q9H2L5 321 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 FAN1Q9Y2M0 1017 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 SESN3P58005 492 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 CCDC15Q0P6D6 951 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 ZC3H12AQ5D1E8 599 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 TRIM74Q86UV6 250 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 TRIM73Q86UV7 250 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 TRMT1Q9NXH9 659 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 ZNF131P52739 623 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 SKIV2LQ15477 1246 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 ZNF394Q53GI3 561 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 SNX32Q86XE0 403 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 IQCGQ9H095 443 aaKnown RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 RABEP2Q9H5N1 569 aa6.38□□□□□ -1.39
PTPN4-203ENST00000430976 EVLQ9UI08 416 aaPredicted RBP6.38□□□□□ -1.39
PTPN4-203ENST00000430976 IL4RP24394 825 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 E2F4Q16254 413 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 ENOX1Q8TC92 643 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 RBM33Q96EV2 1170 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 SLKQ9H2G2 1235 aaPredicted RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 RB1CC1Q8TDY2 1594 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 PSMC1P62191 440 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 NAALADL2Q58DX5 795 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 C1QTNF12Q5T7M4 302 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 UBE2Q1Q7Z7E8 422 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 ZSCAN30Q86W11 494 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 C10orf67Q8IYJ2 551 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 RNF214Q8ND24 703 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 GIMAP7Q8NHV1 300 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 NRBP1Q9UHY1 535 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 KIF11P52732 1056 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 GYS2P54840 703 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 TSR1Q2NL82 804 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 ALKBH2Q6NS38 261 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 CLASRPQ8N2M8 674 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 JDP2Q8WYK2 163 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 AS3MTQ9HBK9 375 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 ZNHIT6Q9NWK9 470 aaKnown RBP6.37□□□□□ -1.39
PTPN4-203ENST00000430976 ZNF232Q9UNY5 417 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 SBNO2Q9Y2G9 1366 aa6.37□□□□□ -1.39
PTPN4-203ENST00000430976 SLC20A2Q08357 652 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 AKNAD1Q5T1N1 836 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 SAPCD2Q86UD0 394 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 CERKQ8TCT0 537 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 ATG3Q9NT62 314 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 KIF3CO14782 793 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 APLP1P51693 650 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 DEUP1Q05D60 604 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 TSNAXIP1Q2TAA8 658 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 SUGP1Q8IWZ8 645 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 RANBP17Q9H2T7 1088 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 MYO1BO43795 1136 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 POLR2FP61218 127 aaKnown RBP6.36□□□□□ -1.39
PTPN4-203ENST00000430976 PIP4K2BP78356 416 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 SEPT2Q15019 361 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 JAKMIP3Q5VZ66 844 aa6.36□□□□□ -1.39
PTPN4-203ENST00000430976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.36□□□□□ -1.391e-6■■■■□ 21
PTPN4-203ENST00000430976 TMOD4Q9NZQ9 345 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms