RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 LRRC37A3O60309 1634 aa16.16■□□□□ 0.18
LINC00539-202ENST00000423575 TATP17735 454 aaPredicted RBP16.15■□□□□ 0.18
LINC00539-202ENST00000423575 WDR43Q15061 677 aaKnown RBP eCLIP16.15■□□□□ 0.18
LINC00539-202ENST00000423575 PARP4Q9UKK3 1724 aaKnown RBP16.14■□□□□ 0.17
LINC00539-202ENST00000423575 PRKAR2BP31323 418 aa16.14■□□□□ 0.17
LINC00539-202ENST00000423575 PNISRQ8TF01 805 aaKnown RBP16.14■□□□□ 0.17
LINC00539-202ENST00000423575 PLEKHG2Q9H7P9 1386 aa16.13■□□□□ 0.17
LINC00539-202ENST00000423575 FCHSD2O94868 740 aa16.13■□□□□ 0.17
LINC00539-202ENST00000423575 DDB1Q16531 1140 aa16.13■□□□□ 0.17
LINC00539-202ENST00000423575 ADAMTS8Q9UP79 889 aa16.13■□□□□ 0.17
LINC00539-202ENST00000423575 ZCRB1Q8TBF4 217 aaKnown RBP16.11■□□□□ 0.17
LINC00539-202ENST00000423575 PKD1L3Q7Z443 1732 aa16.11■□□□□ 0.17
LINC00539-202ENST00000423575 EXOC5O00471 708 aa16.1■□□□□ 0.17
LINC00539-202ENST00000423575 PLEKHF1Q96S99 279 aa16.1■□□□□ 0.17
LINC00539-202ENST00000423575 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.1■□□□□ 0.17
LINC00539-202ENST00000423575 PLEKHO1Q53GL0 409 aaPredicted RBP16.09■□□□□ 0.17
LINC00539-202ENST00000423575 CCDC146Q8IYE0 955 aa16.09■□□□□ 0.17
LINC00539-202ENST00000423575 PHACTR3Q96KR7 559 aa16.09■□□□□ 0.17
LINC00539-202ENST00000423575 SPG7Q9UQ90 795 aa16.09■□□□□ 0.17
LINC00539-202ENST00000423575 SHANK3Q9BYB0 1731 aa16.08■□□□□ 0.17
LINC00539-202ENST00000423575 CYP27B1O15528 508 aa16.08■□□□□ 0.16
LINC00539-202ENST00000423575 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
LINC00539-202ENST00000423575 AMOTQ4VCS5 1084 aa16.08■□□□□ 0.16
LINC00539-202ENST00000423575 ZNF530Q6P9A1 599 aaPredicted RBP16.08■□□□□ 0.16
LINC00539-202ENST00000423575 KRT27Q7Z3Y8 459 aa16.08■□□□□ 0.16
LINC00539-202ENST00000423575 MARCH10Q8NA82 808 aaPredicted RBP16.08■□□□□ 0.16
LINC00539-202ENST00000423575 PCDH11XQ9BZA7 1347 aa16.08■□□□□ 0.16
LINC00539-202ENST00000423575 PCDH11YQ9BZA8 1340 aa16.08■□□□□ 0.16
LINC00539-202ENST00000423575 PDE3BQ13370 1112 aa16.07■□□□□ 0.16
LINC00539-202ENST00000423575 FAM9BQ8IZU0 186 aa16.07■□□□□ 0.16
LINC00539-202ENST00000423575 DDX54Q8TDD1 881 aaKnown RBP16.07■□□□□ 0.16
LINC00539-202ENST00000423575 BRWD3Q6RI45 1802 aa16.07■□□□□ 0.16
LINC00539-202ENST00000423575 FAM182BQ5T319 152 aa16.06■□□□□ 0.16
LINC00539-202ENST00000423575 MAPK8IP3Q9UPT6 1336 aa16.05■□□□□ 0.16
LINC00539-202ENST00000423575 PHKG2P15735 406 aa16.05■□□□□ 0.16
LINC00539-202ENST00000423575 PNNQ9H307 717 aaKnown RBP16.05■□□□□ 0.16
LINC00539-202ENST00000423575 ILDR2Q71H61 639 aa16.04■□□□□ 0.16
LINC00539-202ENST00000423575 GAS2L2Q8NHY3 880 aa16.04■□□□□ 0.16
LINC00539-202ENST00000423575 RUNDC1Q96C34 613 aa16.04■□□□□ 0.16
LINC00539-202ENST00000423575 NEFMP07197 916 aa16.03■□□□□ 0.16
LINC00539-202ENST00000423575 IFNL2Q8IZJ0 200 aa16.03■□□□□ 0.16
LINC00539-202ENST00000423575 BCL9O00512 1426 aa16.02■□□□□ 0.16
LINC00539-202ENST00000423575 MAP3K5Q99683 1374 aa16.02■□□□□ 0.16
LINC00539-202ENST00000423575 NKX1-1Q15270 411 aaPredicted RBP16.02■□□□□ 0.16
LINC00539-202ENST00000423575 NFE2L2Q16236 605 aa16.02■□□□□ 0.16
LINC00539-202ENST00000423575 AKAP4Q5JQC9 854 aa16.02■□□□□ 0.16
LINC00539-202ENST00000423575 C1orf141Q5JVX7 400 aa16.02■□□□□ 0.16
LINC00539-202ENST00000423575 EP400Q96L91 3159 aa16.02■□□□□ 0.15
LINC00539-202ENST00000423575 KDM6AO15550 1401 aaPredicted RBP16.02■□□□□ 0.15
LINC00539-202ENST00000423575 APAF1O14727 1248 aa16■□□□□ 0.15
LINC00539-202ENST00000423575 RRP7AQ9Y3A4 280 aaKnown RBP16■□□□□ 0.15
LINC00539-202ENST00000423575 TMPOP42166 694 aaKnown RBP15.99■□□□□ 0.15
LINC00539-202ENST00000423575 MPRIPQ6WCQ1 1025 aa15.99■□□□□ 0.15
LINC00539-202ENST00000423575 FAM196AQ6ZSG2 479 aa15.99■□□□□ 0.15
LINC00539-202ENST00000423575 SENP3-EIF4A1A0A087X0R7 540 aa15.98■□□□□ 0.15
LINC00539-202ENST00000423575 GNAT3A8MTJ3 354 aa15.98■□□□□ 0.15
LINC00539-202ENST00000423575 HSP90AB1P08238 724 aaKnown RBP15.98■□□□□ 0.15
LINC00539-202ENST00000423575 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
LINC00539-202ENST00000423575 TOGARAM1Q9Y4F4 1720 aa15.97■□□□□ 0.15
LINC00539-202ENST00000423575 ACSBG1Q96GR2 724 aa15.97■□□□□ 0.15
LINC00539-202ENST00000423575 LGR6Q9HBX8 967 aa15.97■□□□□ 0.15
LINC00539-202ENST00000423575 ADAMTS7Q9UKP4 1686 aa15.96■□□□□ 0.15
LINC00539-202ENST00000423575 RNMTO43148 476 aaKnown RBP15.96■□□□□ 0.15
LINC00539-202ENST00000423575 RIPK4P57078 832 aa15.96■□□□□ 0.15
LINC00539-202ENST00000423575 NEUROD2Q15784 382 aa15.96■□□□□ 0.15
LINC00539-202ENST00000423575 IL17REQ8NFR9 667 aa15.96■□□□□ 0.15
LINC00539-202ENST00000423575 DOT1LQ8TEK3 1739 aa15.96■□□□□ 0.15
LINC00539-202ENST00000423575 KCNQ2O43526 872 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 PRIM1P49642 420 aaKnown RBP15.95■□□□□ 0.14
LINC00539-202ENST00000423575 DCTN1Q14203 1278 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 MCM10Q7L590 875 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 PTF1AQ7RTS3 328 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 CEMIPQ8WUJ3 1361 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 MRC1P22897 1456 aa15.95■□□□□ 0.14
LINC00539-202ENST00000423575 HTATSF1O43719 755 aaKnown RBP15.94■□□□□ 0.14
LINC00539-202ENST00000423575 TRIM37O94972 964 aa15.94■□□□□ 0.14
LINC00539-202ENST00000423575 RTF1Q92541 710 aaKnown RBP15.94■□□□□ 0.14
LINC00539-202ENST00000423575 THUMPD2Q9BTF0 503 aaKnown RBP15.94■□□□□ 0.14
LINC00539-202ENST00000423575 TRIM35Q9UPQ4 493 aa15.94■□□□□ 0.14
LINC00539-202ENST00000423575 NHSQ6T4R5 1651 aa15.94■□□□□ 0.14
LINC00539-202ENST00000423575 ERVV-2B6SEH9 535 aa15.93■□□□□ 0.14
LINC00539-202ENST00000423575 LMOD3Q0VAK6 560 aa15.93■□□□□ 0.14
LINC00539-202ENST00000423575 SYTL4Q96C24 671 aaPredicted RBP15.93■□□□□ 0.14
LINC00539-202ENST00000423575 SLC52A2Q9HAB3 445 aa15.92■□□□□ 0.14
LINC00539-202ENST00000423575 SCN11AQ9UI33 1791 aa15.92■□□□□ 0.14
LINC00539-202ENST00000423575 DLG5Q8TDM6 1919 aa15.92■□□□□ 0.14
LINC00539-202ENST00000423575 CABP4P57796 275 aa15.91■□□□□ 0.14
LINC00539-202ENST00000423575 PIGBQ92521 554 aa15.91■□□□□ 0.14
LINC00539-202ENST00000423575 BCL11BQ9C0K0 894 aaPredicted RBP15.91■□□□□ 0.14
LINC00539-202ENST00000423575 TMOD3Q9NYL9 352 aa15.91■□□□□ 0.14
LINC00539-202ENST00000423575 SBF2Q86WG5 1849 aa15.91■□□□□ 0.14
LINC00539-202ENST00000423575 SALL2Q9Y467 1007 aaPredicted RBP15.9■□□□□ 0.14
LINC00539-202ENST00000423575 TEFQ10587 303 aa15.89■□□□□ 0.13
LINC00539-202ENST00000423575 CCDC27Q2M243 656 aa15.89■□□□□ 0.13
LINC00539-202ENST00000423575 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
LINC00539-202ENST00000423575 NFATC2IPQ8NCF5 419 aa15.89■□□□□ 0.13
LINC00539-202ENST00000423575 TNS1Q9HBL0 1735 aaKnown RBP15.88■□□□□ 0.13
LINC00539-202ENST00000423575 WWC1Q8IX03 1113 aa15.87■□□□□ 0.13
LINC00539-202ENST00000423575 UPF1Q92900 1129 aaKnown RBP eCLIP15.87■□□□□ 0.13
LINC00539-202ENST00000423575 ITGB4P16144 1822 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms