RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 CCDC186Q7Z3E2 898 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 CEBPZQ03701 1054 aaKnown RBP4.03□□□□□ -1.76
SYNE1-212ENST00000423061 CCDC102AQ96A19 550 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 ARHGAP29Q52LW3 1261 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 BRMS1Q9HCU9 246 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 MMS22LQ6ZRQ5 1243 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 BCAR3O75815 825 aa4.03□□□□□ -1.76
SYNE1-212ENST00000423061 KIF9Q9HAQ2 790 aa4.03□□□□□ -1.77
SYNE1-212ENST00000423061 SGSM3Q96HU1 749 aa4.03□□□□□ -1.77
SYNE1-212ENST00000423061 LNPKQ9C0E8 428 aa4.03□□□□□ -1.77
SYNE1-212ENST00000423061 ESF1Q9H501 851 aaKnown RBP4.03□□□□□ -1.77
SYNE1-212ENST00000423061 KLHL40Q2TBA0 621 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 TULP2O00295 520 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 CCDC144AA2RUR9 1427 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ANKRD18AQ8IVF6 992 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PPP6R1Q9UPN7 881 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 SEC31AO94979 1220 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 EIF2S2P20042 333 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 K7ELQ4 463 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 CCP110O43303 1012 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 FAM107BQ9H098 131 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PROCA1Q8NCQ7 364 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PAXBP1Q9Y5B6 917 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ACTN3Q08043 901 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 CWC27Q6UX04 472 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 URI1O94763 535 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ZSWIM4Q9H7M6 989 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 TMEM165Q9HC07 324 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 EIF3CLB5ME19 914 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 GAS2L2Q8NHY3 880 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 EIF3CQ99613 913 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ZNF215Q9UL58 517 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PLEKHD1A6NEE1 506 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 CCDC7Q96M83 1385 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 SYTL4Q96C24 671 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 CASKIN1Q8WXD9 1431 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 REC8O95072 547 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 GIMAP6Q6P9H5 292 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 IVLP07476 585 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PPARDQ03181 441 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 PRDM16Q9HAZ2 1276 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 MAGEA9P43362 315 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 NOC3LQ8WTT2 800 aaKnown RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 SPTLC3Q9NUV7 552 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 NBPF11Q86T75 865 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 BRD4O60885 1362 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-212ENST00000423061 ROCK1Q13464 1354 aa4.02□□□□□ -1.77
SYNE1-212ENST00000423061 JAKMIP3Q5VZ66 844 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 FOXR1Q6PIV2 292 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CGNL1Q0VF96 1302 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CYP2C19P33261 490 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 FMNL3Q8IVF7 1028 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 SLC20A2Q08357 652 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 APAF1O14727 1248 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 PTPN14Q15678 1187 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CUL7Q14999 1698 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ST18O60284 1047 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 SKILP12757 684 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ENO4A6NNW6 628 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 SSBP05455 408 aaKnown RBP eCLIP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ENOX2Q16206 610 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 DYDC1Q8WWB3 177 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ANKRD7Q92527 254 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 KMT5BQ4FZB7 885 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CAND2O75155 1236 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ATP2C2O75185 946 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 NUP133Q8WUM0 1156 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 SCAPERQ9BY12 1400 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 FAM177A1Q8N128 213 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CCDC114Q96M63 670 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 RAB3GAP1Q15042 981 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 NUCKS1Q9H1E3 243 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 THOC1Q96FV9 657 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ACRBPQ8NEB7 543 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 TMX4Q9H1E5 349 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 RNF123Q5XPI4 1314 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 CARMIL2Q6F5E8 1435 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ZRSR2Q15696 482 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 OTUD6BQ8N6M0 293 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 PPP1R12AO14974 1030 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 OAS2P29728 719 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ST5P78524 1137 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 KCTD17Q8N5Z5 321 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 PNMA6AP0CW24 399 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-212ENST00000423061 ZNF445P59923 1031 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 SMC5Q8IY18 1101 aa4.01□□□□□ -1.77
SYNE1-212ENST00000423061 N4BP2L2Q92802 583 aaPredicted RBP4□□□□□ -1.77
SYNE1-212ENST00000423061 SMARCA5O60264 1052 aaPredicted RBP4□□□□□ -1.77
SYNE1-212ENST00000423061 PDILTQ8N807 584 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 ACBD3Q9H3P7 528 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 ERCC6Q03468 1493 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 NBPF9Q3BBW0 867 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 MORC1Q86VD1 984 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 LMBRD1Q9NUN5 540 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 NCOA2Q15596 1464 aa4□□□□□ -1.77
SYNE1-212ENST00000423061 PAX3P23760 479 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms