RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 THRAP3Q9Y2W1 955 aaKnown RBP11.23□□□□□ -0.61
TRIM48-201ENST00000417545 SPATA31A1Q5TZJ5 1347 aa11.23□□□□□ -0.61
TRIM48-201ENST00000417545 SPATA31A5Q5VU36 1347 aa11.23□□□□□ -0.61
TRIM48-201ENST00000417545 SPATA31A7Q8IWB4 1347 aa11.23□□□□□ -0.61
TRIM48-201ENST00000417545 IGSF1Q8N6C5 1336 aa11.23□□□□□ -0.61
TRIM48-201ENST00000417545 ATRNO75882 1429 aa11.22□□□□□ -0.61
TRIM48-201ENST00000417545 IL2RBP14784 551 aa11.22□□□□□ -0.61
TRIM48-201ENST00000417545 PRKAR2BP31323 418 aa11.21□□□□□ -0.61
TRIM48-201ENST00000417545 FAM98CQ17RN3 349 aaKnown RBP11.21□□□□□ -0.61
TRIM48-201ENST00000417545 GJD4Q96KN9 370 aaPredicted RBP11.21□□□□□ -0.61
TRIM48-201ENST00000417545 CDCA7Q9BWT1 371 aaPredicted RBP11.21□□□□□ -0.61
TRIM48-201ENST00000417545 FCHSD2O94868 740 aa11.2□□□□□ -0.62
TRIM48-201ENST00000417545 RBM6P78332 1123 aaKnown RBP11.2□□□□□ -0.62
TRIM48-201ENST00000417545 AEBP1Q8IUX7 1158 aa11.2□□□□□ -0.62
TRIM48-201ENST00000417545 RXRBP28702 533 aa11.19□□□□□ -0.62
TRIM48-201ENST00000417545 PLEKHO1Q53GL0 409 aaPredicted RBP11.19□□□□□ -0.62
TRIM48-201ENST00000417545 CCDC146Q8IYE0 955 aa11.19□□□□□ -0.62
TRIM48-201ENST00000417545 ADAMTS8Q9UP79 889 aa11.19□□□□□ -0.62
TRIM48-201ENST00000417545 SPG7Q9UQ90 795 aa11.19□□□□□ -0.62
TRIM48-201ENST00000417545 GLI3P10071 1580 aa11.19□□□□□ -0.62
TRIM48-201ENST00000417545 DDB1Q16531 1140 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 C1orf141Q5JVX7 400 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 PNISRQ8TF01 805 aaKnown RBP11.18□□□□□ -0.62
TRIM48-201ENST00000417545 MEGF6O75095 1541 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 NCAPD2Q15021 1401 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 KDRP35968 1356 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 EXOC5O00471 708 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 PDE3BQ13370 1112 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 AMOTQ4VCS5 1084 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 BARGINQ6ZT62 677 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 RUNDC1Q96C34 613 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 RSPH6AQ9H0K4 717 aa11.18□□□□□ -0.62
TRIM48-201ENST00000417545 PKD1L3Q7Z443 1732 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 LRRC37A3O60309 1634 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 OVOS2A0A0G2JMS6 1433 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 PCDH11XQ9BZA7 1347 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 PCDH11YQ9BZA8 1340 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 ZNF530Q6P9A1 599 aaPredicted RBP11.17□□□□□ -0.62
TRIM48-201ENST00000417545 GAS2L2Q8NHY3 880 aa11.17□□□□□ -0.62
TRIM48-201ENST00000417545 ZCRB1Q8TBF4 217 aaKnown RBP11.17□□□□□ -0.62
TRIM48-201ENST00000417545 TNS2Q63HR2 1409 aa11.16□□□□□ -0.62
TRIM48-201ENST00000417545 DDX54Q8TDD1 881 aaKnown RBP11.16□□□□□ -0.62
TRIM48-201ENST00000417545 THSD7AQ9UPZ6 1657 aa11.16□□□□□ -0.62
TRIM48-201ENST00000417545 PLEKHG2Q9H7P9 1386 aa11.15□□□□□ -0.62
TRIM48-201ENST00000417545 NEUROD2Q15784 382 aa11.15□□□□□ -0.62
TRIM48-201ENST00000417545 SEPT12Q8IYM1 358 aa11.15□□□□□ -0.62
TRIM48-201ENST00000417545 RTF1Q92541 710 aaKnown RBP11.15□□□□□ -0.62
TRIM48-201ENST00000417545 DISP2A7MBM2 1401 aa11.14□□□□□ -0.63
TRIM48-201ENST00000417545 DLG5Q8TDM6 1919 aa11.14□□□□□ -0.63
TRIM48-201ENST00000417545 ABCB7O75027 752 aa11.14□□□□□ -0.63
TRIM48-201ENST00000417545 LMOD3Q0VAK6 560 aa11.14□□□□□ -0.63
TRIM48-201ENST00000417545 POTEAQ6S8J7 498 aa11.14□□□□□ -0.63
TRIM48-201ENST00000417545 HSP90AB1P08238 724 aaKnown RBP11.13□□□□□ -0.63
TRIM48-201ENST00000417545 NFE2L2Q16236 605 aa11.13□□□□□ -0.63
TRIM48-201ENST00000417545 IFNL2Q8IZJ0 200 aa11.13□□□□□ -0.63
TRIM48-201ENST00000417545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.13□□□□□ -0.63
TRIM48-201ENST00000417545 RGS17Q9UGC6 210 aaPredicted RBP11.13□□□□□ -0.63
TRIM48-201ENST00000417545 VIRMAQ69YN4 1812 aaKnown RBP11.13□□□□□ -0.63
TRIM48-201ENST00000417545 BRWD3Q6RI45 1802 aa11.13□□□□□ -0.63
TRIM48-201ENST00000417545 SHANK3Q9BYB0 1731 aa11.12□□□□□ -0.63
TRIM48-201ENST00000417545 RIPK4P57078 832 aa11.12□□□□□ -0.63
TRIM48-201ENST00000417545 MTHFSDQ2M296 383 aaKnown RBP11.12□□□□□ -0.63
TRIM48-201ENST00000417545 RRP7AQ9Y3A4 280 aaKnown RBP11.12□□□□□ -0.63
TRIM48-201ENST00000417545 SALL2Q9Y467 1007 aaPredicted RBP11.12□□□□□ -0.63
TRIM48-201ENST00000417545 MAP3K5Q99683 1374 aa11.12□□□□□ -0.63
TRIM48-201ENST00000417545 KAT6BQ8WYB5 2073 aa11.12□□□□□ -0.63
TRIM48-201ENST00000417545 SENP3-EIF4A1A0A087X0R7 540 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 GNAT3A8MTJ3 354 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 APAF1O14727 1248 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 HNRNPUQ00839 825 aaKnown RBP eCLIP11.11□□□□□ -0.63
TRIM48-201ENST00000417545 AKAP4Q5JQC9 854 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 PHACTR3Q96KR7 559 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 YTHDC1Q96MU7 727 aaKnown RBP11.11□□□□□ -0.63
TRIM48-201ENST00000417545 PLEKHF1Q96S99 279 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 RGS12O14924 1447 aa11.11□□□□□ -0.63
TRIM48-201ENST00000417545 PHKG2P15735 406 aa11.1□□□□□ -0.63
TRIM48-201ENST00000417545 TMPOP42166 694 aaKnown RBP11.1□□□□□ -0.63
TRIM48-201ENST00000417545 KRT27Q7Z3Y8 459 aa11.1□□□□□ -0.63
TRIM48-201ENST00000417545 DOT1LQ8TEK3 1739 aa11.1□□□□□ -0.63
TRIM48-201ENST00000417545 SCN11AQ9UI33 1791 aa11.09□□□□□ -0.63
TRIM48-201ENST00000417545 ONECUT3O60422 494 aaPredicted RBP11.09□□□□□ -0.63
TRIM48-201ENST00000417545 CALD1Q05682 793 aaKnown RBP11.09□□□□□ -0.63
TRIM48-201ENST00000417545 TEFQ10587 303 aa11.09□□□□□ -0.63
TRIM48-201ENST00000417545 NGEFQ8N5V2 710 aa11.09□□□□□ -0.63
TRIM48-201ENST00000417545 SYTL4Q96C24 671 aaPredicted RBP11.09□□□□□ -0.63
TRIM48-201ENST00000417545 MPRIPQ6WCQ1 1025 aa11.08□□□□□ -0.64
TRIM48-201ENST00000417545 DCAF5Q96JK2 942 aa11.08□□□□□ -0.64
TRIM48-201ENST00000417545 CYP27B1O15528 508 aa11.07□□□□□ -0.64
TRIM48-201ENST00000417545 HTATSF1O43719 755 aaKnown RBP11.07□□□□□ -0.64
TRIM48-201ENST00000417545 CABP4P57796 275 aa11.07□□□□□ -0.64
TRIM48-201ENST00000417545 MARCH10Q8NA82 808 aaPredicted RBP11.07□□□□□ -0.64
TRIM48-201ENST00000417545 LAS1LQ9Y4W2 734 aaKnown RBP11.07□□□□□ -0.64
TRIM48-201ENST00000417545 RNMTO43148 476 aaKnown RBP11.06□□□□□ -0.64
TRIM48-201ENST00000417545 FAM182BQ5T319 152 aa11.06□□□□□ -0.64
TRIM48-201ENST00000417545 FAM196AQ6ZSG2 479 aa11.06□□□□□ -0.64
TRIM48-201ENST00000417545 MCM10Q7L590 875 aa11.06□□□□□ -0.64
TRIM48-201ENST00000417545 ACSBG1Q96GR2 724 aa11.06□□□□□ -0.64
TRIM48-201ENST00000417545 TMOD3Q9NYL9 352 aa11.06□□□□□ -0.64
TRIM48-201ENST00000417545 ITGB4P16144 1822 aa11.05□□□□□ -0.64
TRIM48-201ENST00000417545 TOGARAM1Q9Y4F4 1720 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms