RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 HDAC5Q9UQL6 1122 aa25.46■■□□□ 1.67
AP1S3-205ENST00000415298 PIK3C2AO00443 1686 aa25.46■■□□□ 1.67
AP1S3-205ENST00000415298 WWC1Q8IX03 1113 aa25.46■■□□□ 1.67
AP1S3-205ENST00000415298 GZF1Q9H116 711 aaPredicted RBP25.46■■□□□ 1.67
AP1S3-205ENST00000415298 CGNQ9P2M7 1197 aaKnown RBP25.46■■□□□ 1.67
AP1S3-205ENST00000415298 CERKQ8TCT0 537 aa25.44■■□□□ 1.66
AP1S3-205ENST00000415298 MTHFSP49914 203 aa25.44■■□□□ 1.66
AP1S3-205ENST00000415298 ANKRD26Q9UPS8 1709 aa25.44■■□□□ 1.66
AP1S3-205ENST00000415298 IRX5P78411 483 aaPredicted RBP25.43■■□□□ 1.66
AP1S3-205ENST00000415298 OVOS2A0A0J9YW53 1432 aa25.43■■□□□ 1.66
AP1S3-205ENST00000415298 OVOS2Q6IE36 1432 aa25.43■■□□□ 1.66
AP1S3-205ENST00000415298 UBAP1LF5GYI3 381 aa25.42■■□□□ 1.66
AP1S3-205ENST00000415298 MAPK8IP2Q13387 824 aaPredicted RBP25.42■■□□□ 1.66
AP1S3-205ENST00000415298 RRS1Q15050 365 aaKnown RBP25.42■■□□□ 1.66
AP1S3-205ENST00000415298 MSNP26038 577 aaKnown RBP25.41■■□□□ 1.66
AP1S3-205ENST00000415298 TRPM3Q9HCF6 1732 aaPredicted RBP25.41■■□□□ 1.66
AP1S3-205ENST00000415298 TOM1O60784 492 aa25.41■■□□□ 1.66
AP1S3-205ENST00000415298 PXDNQ92626 1479 aa25.41■■□□□ 1.66
AP1S3-205ENST00000415298 C8orf34Q49A92 452 aa25.4■■□□□ 1.66
AP1S3-205ENST00000415298 ROBO1Q9Y6N7 1651 aa25.4■■□□□ 1.66
AP1S3-205ENST00000415298 POLKQ9UBT6 870 aa25.39■■□□□ 1.66
AP1S3-205ENST00000415298 EMILIN1Q9Y6C2 1016 aa25.39■■□□□ 1.66
AP1S3-205ENST00000415298 BRD4O60885 1362 aaPredicted RBP25.39■■□□□ 1.66
AP1S3-205ENST00000415298 USP31Q70CQ4 1352 aa25.39■■□□□ 1.65
AP1S3-205ENST00000415298 PSEN1P49768 467 aa25.38■■□□□ 1.65
AP1S3-205ENST00000415298 SOS2Q07890 1332 aaPredicted RBP25.38■■□□□ 1.65
AP1S3-205ENST00000415298 BECN1Q14457 450 aa25.38■■□□□ 1.65
AP1S3-205ENST00000415298 MARF1Q9Y4F3 1742 aaKnown RBP25.37■■□□□ 1.65
AP1S3-205ENST00000415298 MAP2P11137 1827 aaKnown RBP25.37■■□□□ 1.65
AP1S3-205ENST00000415298 CABLES1Q8TDN4 633 aa25.37■■□□□ 1.65
AP1S3-205ENST00000415298 ANTXR1Q9H6X2 564 aa25.37■■□□□ 1.65
AP1S3-205ENST00000415298 MCM4P33991 863 aa25.36■■□□□ 1.65
AP1S3-205ENST00000415298 SPATA31A3Q5VYP0 1347 aa25.36■■□□□ 1.65
AP1S3-205ENST00000415298 PNISRQ8TF01 805 aaKnown RBP25.35■■□□□ 1.65
AP1S3-205ENST00000415298 TRAK2O60296 914 aa25.34■■□□□ 1.65
AP1S3-205ENST00000415298 AXDND1Q5T1B0 1012 aaPredicted RBP25.34■■□□□ 1.65
AP1S3-205ENST00000415298 CERS3Q8IU89 383 aa25.34■■□□□ 1.65
AP1S3-205ENST00000415298 SLKQ9H2G2 1235 aaPredicted RBP25.34■■□□□ 1.65
AP1S3-205ENST00000415298 CCDC173Q0VFZ6 552 aa25.34■■□□□ 1.65
AP1S3-205ENST00000415298 SBNO1A3KN83 1393 aa25.34■■□□□ 1.65
AP1S3-205ENST00000415298 CBX1P83916 185 aa25.33■■□□□ 1.65
AP1S3-205ENST00000415298 APPP05067 770 aa25.33■■□□□ 1.65
AP1S3-205ENST00000415298 SKAP1Q86WV1 359 aa25.33■■□□□ 1.65
AP1S3-205ENST00000415298 ALS2Q96Q42 1657 aa25.33■■□□□ 1.64
AP1S3-205ENST00000415298 ZNF622Q969S3 477 aaKnown RBP eCLIP25.32■■□□□ 1.64
AP1S3-205ENST00000415298 NHSL1Q5SYE7 1610 aa25.32■■□□□ 1.64
AP1S3-205ENST00000415298 TNS3Q68CZ2 1445 aa25.31■■□□□ 1.64
AP1S3-205ENST00000415298 FAM193AP78312 1265 aa25.31■■□□□ 1.64
AP1S3-205ENST00000415298 PPP1R9BQ96SB3 815 aa25.31■■□□□ 1.64
AP1S3-205ENST00000415298 SENP3-EIF4A1A0A087X0R7 540 aa25.31■■□□□ 1.64
AP1S3-205ENST00000415298 GCP02774 474 aa25.3■■□□□ 1.64
AP1S3-205ENST00000415298 AATKQ6ZMQ8 1374 aa25.3■■□□□ 1.64
AP1S3-205ENST00000415298 MAP3K19Q56UN5 1328 aa25.3■■□□□ 1.64
AP1S3-205ENST00000415298 MYCNP04198 464 aaPredicted RBP25.29■■□□□ 1.64
AP1S3-205ENST00000415298 ZBTB7CA1YPR0 619 aa25.28■■□□□ 1.64
AP1S3-205ENST00000415298 PTMSP20962 102 aa25.28■■□□□ 1.64
AP1S3-205ENST00000415298 ZNF500O60304 480 aaPredicted RBP25.27■■□□□ 1.64
AP1S3-205ENST00000415298 AEBP1Q8IUX7 1158 aa25.27■■□□□ 1.64
AP1S3-205ENST00000415298 SASS6Q6UVJ0 657 aa25.27■■□□□ 1.64
AP1S3-205ENST00000415298 YY1AP1Q9H869 796 aa25.27■■□□□ 1.64
AP1S3-205ENST00000415298 MED1Q15648 1581 aaPredicted RBP25.27■■□□□ 1.64
AP1S3-205ENST00000415298 ZC3H6P61129 1189 aaKnown RBP25.26■■□□□ 1.63
AP1S3-205ENST00000415298 HSP90AB2PQ58FF8 381 aa25.26■■□□□ 1.63
AP1S3-205ENST00000415298 KCNJ4P48050 445 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 CSPP1Q1MSJ5 1256 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 ADAMTS8Q9UP79 889 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 USP19O94966 1318 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 IQSEC2Q5JU85 1478 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 USP54Q70EL1 1684 aa25.25■■□□□ 1.63
AP1S3-205ENST00000415298 PTMAP06454 111 aaKnown RBP25.24■■□□□ 1.63
AP1S3-205ENST00000415298 LRRC59Q96AG4 307 aaKnown RBP25.23■■□□□ 1.63
AP1S3-205ENST00000415298 CFAP53Q96M91 514 aa25.23■■□□□ 1.63
AP1S3-205ENST00000415298 GEMIN8Q9NWZ8 242 aaKnown RBP25.23■■□□□ 1.63
AP1S3-205ENST00000415298 PEAK1Q9H792 1746 aa25.23■■□□□ 1.63
AP1S3-205ENST00000415298 PNPLA6Q8IY17 1366 aa25.23■■□□□ 1.63
AP1S3-205ENST00000415298 NGEFQ8N5V2 710 aa25.23■■□□□ 1.63
AP1S3-205ENST00000415298 KCNH5Q8NCM2 988 aa25.23■■□□□ 1.63
AP1S3-205ENST00000415298 ARHGEF10O15013 1369 aa25.22■■□□□ 1.63
AP1S3-205ENST00000415298 AMPHP49418 695 aa25.22■■□□□ 1.63
AP1S3-205ENST00000415298 AHDC1Q5TGY3 1603 aaPredicted RBP25.22■■□□□ 1.63
AP1S3-205ENST00000415298 HS1BP3Q53T59 392 aa25.21■■□□□ 1.63
AP1S3-205ENST00000415298 NFAT5O94916 1531 aa25.21■■□□□ 1.63
AP1S3-205ENST00000415298 SLIT3O75094 1523 aa25.2■■□□□ 1.63
AP1S3-205ENST00000415298 COL3A1P02461 1466 aaPredicted RBP25.2■■□□□ 1.62
AP1S3-205ENST00000415298 DIAPH1O60610 1272 aaKnown RBP25.19■■□□□ 1.62
AP1S3-205ENST00000415298 WDR43Q15061 677 aaKnown RBP eCLIP25.19■■□□□ 1.62
AP1S3-205ENST00000415298 ARHGEF25Q86VW2 580 aa25.19■■□□□ 1.62
AP1S3-205ENST00000415298 RCAN3Q9UKA8 241 aa25.19■■□□□ 1.62
AP1S3-205ENST00000415298 PHLPP1O60346 1717 aa25.19■■□□□ 1.62
AP1S3-205ENST00000415298 U2SURPO15042 1029 aaKnown RBP25.19■■□□□ 1.62
AP1S3-205ENST00000415298 GRIPAP1Q4V328 841 aa25.18■■□□□ 1.62
AP1S3-205ENST00000415298 PATL2C9JE40 543 aaKnown RBP25.18■■□□□ 1.62
AP1S3-205ENST00000415298 HOXC9P31274 260 aa25.18■■□□□ 1.62
AP1S3-205ENST00000415298 SHPRHQ149N8 1683 aa25.17■■□□□ 1.62
AP1S3-205ENST00000415298 ATP2B3Q16720 1220 aa25.17■■□□□ 1.62
AP1S3-205ENST00000415298 LTN1O94822 1766 aa25.17■■□□□ 1.62
AP1S3-205ENST00000415298 AXIN2Q9Y2T1 843 aa25.17■■□□□ 1.62
AP1S3-205ENST00000415298 CHRNA2Q15822 529 aa25.16■■□□□ 1.62
AP1S3-205ENST00000415298 ZNF771Q7L3S4 317 aaPredicted RBP25.16■■□□□ 1.62
AP1S3-205ENST00000415298 CDK12Q9NYV4 1490 aaPredicted RBP25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms