RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ANKRD62A6NC57 917 aa15.04■□□□□ -0
COL6A3-206ENST00000409809 USO1O60763 962 aaKnown RBP15.04■□□□□ -0
COL6A3-206ENST00000409809 KIF5BP33176 963 aa15.04■□□□□ -0
COL6A3-206ENST00000409809 MPHOSPH10O00566 681 aaKnown RBP15.04■□□□□ -0
COL6A3-206ENST00000409809 FMNL3Q8IVF7 1028 aa15.04■□□□□ -0
COL6A3-206ENST00000409809 CTCFLQ8NI51 663 aaPredicted RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 SH2B1Q9NRF2 756 aaPredicted RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 PAK3O75914 559 aaPredicted RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 HOOK3Q86VS8 718 aa15.03■□□□□ -0
COL6A3-206ENST00000409809 PYM1Q9BRP8 204 aaKnown RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 AIMP1Q12904 312 aaKnown RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 PPP1R12BO60237 982 aaPredicted RBP15.03■□□□□ -0
COL6A3-206ENST00000409809 SYCE3A1L190 88 aa15.02■□□□□ -0
COL6A3-206ENST00000409809 TRIM34Q9BYJ4 488 aa15.02■□□□□ -0
COL6A3-206ENST00000409809 CLIP2Q9UDT6 1046 aa15.02■□□□□ -0
COL6A3-206ENST00000409809 FAM184BQ9ULE4 1060 aa15.02■□□□□ -0
COL6A3-206ENST00000409809 PRDM10Q9NQV6 1147 aa15.02■□□□□ -0
COL6A3-206ENST00000409809 DDX19AQ9NUU7 478 aaKnown RBP15.02■□□□□ -0
COL6A3-206ENST00000409809 KLHL40Q2TBA0 621 aa15.02□□□□□ -0.01
COL6A3-206ENST00000409809 SKIDA1Q1XH10 827 aa15.02□□□□□ -0.01
COL6A3-206ENST00000409809 ERICH3Q5RHP9 1530 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 CCDC38Q502W7 563 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 POTEJP0CG39 1038 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 SREK1Q8WXA9 508 aaKnown RBP15.01□□□□□ -0.01
COL6A3-206ENST00000409809 PHAXQ9H814 394 aaKnown RBP15.01□□□□□ -0.01
COL6A3-206ENST00000409809 CFAP100Q494V2 611 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 NOL7Q9UMY1 257 aaKnown RBP15.01□□□□□ -0.01
COL6A3-206ENST00000409809 GOLIM4O00461 696 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 PIP4K2BP78356 416 aa15.01□□□□□ -0.01
COL6A3-206ENST00000409809 SNW1Q13573 536 aaKnown RBP15.01□□□□□ -0.01
COL6A3-206ENST00000409809 LARP1BQ659C4 914 aaKnown RBP15□□□□□ -0.01
COL6A3-206ENST00000409809 CEP135Q66GS9 1140 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 DNAI2Q9GZS0 605 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 STX1AQ16623 288 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 ST20-MTHFSA0A0A6YYL1 179 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 HSF2BPO75031 334 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 FBXW7Q969H0 707 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 EID1Q9Y6B2 187 aa15□□□□□ -0.01
COL6A3-206ENST00000409809 ZBTB17Q13105 803 aa14.99□□□□□ -0.01
COL6A3-206ENST00000409809 SUPT6HQ7KZ85 1726 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 TOP1P11387 765 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 ARFGAP2Q8N6H7 521 aa14.99□□□□□ -0.01
COL6A3-206ENST00000409809 NOL3O60936 208 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 TRIM21P19474 475 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 MKRN1Q9UHC7 482 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 IFI16Q16666 785 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 TCHPQ9BT92 498 aa14.99□□□□□ -0.01
COL6A3-206ENST00000409809 SEPT11Q9NVA2 429 aaKnown RBP14.99□□□□□ -0.01
COL6A3-206ENST00000409809 PRDM2Q13029 1718 aa14.99□□□□□ -0.01
COL6A3-206ENST00000409809 C1orf141Q5JVX7 400 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 CCDC121Q6ZUS5 278 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 MYCBPQ99417 103 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-206ENST00000409809 CCDC9Q9Y3X0 531 aaKnown RBP14.98□□□□□ -0.01
COL6A3-206ENST00000409809 ATAD2BQ9ULI0 1458 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 KIF4BQ2VIQ3 1234 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 IFT74Q96LB3 600 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 AMPHP49418 695 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 COG3Q96JB2 828 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 NUTM1Q86Y26 1132 aa14.98□□□□□ -0.01
COL6A3-206ENST00000409809 BMP2KQ9NSY1 1161 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-206ENST00000409809 LUC7L2Q9Y383 392 aaKnown RBP14.98□□□□□ -0.01
COL6A3-206ENST00000409809 SEPT14Q6ZU15 432 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 UBTFL1P0CB47 393 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-206ENST00000409809 G3V3G9 751 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 TUBB2AQ13885 445 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 DCAF8Q5TAQ9 597 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 TUBB2BQ9BVA1 445 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 ARHGAP25P42331 645 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 MAPK8IP2Q13387 824 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-206ENST00000409809 C16orf45Q96MC5 204 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-206ENST00000409809 STIM2Q9P246 746 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 FKBP15Q5T1M5 1219 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 CCDC27Q2M243 656 aa14.97□□□□□ -0.01
COL6A3-206ENST00000409809 CCDC57Q2TAC2 916 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 PLVAPQ9BX97 442 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 SUDS3Q9H7L9 328 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-206ENST00000409809 APAF1O14727 1248 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 YEATS4O95619 227 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 BRPF1P55201 1214 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-206ENST00000409809 DIAPH1O60610 1272 aaKnown RBP14.96□□□□□ -0.01
COL6A3-206ENST00000409809 EFCAB5A4FU69 1503 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 TACC1O75410 805 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 MRVI1Q9Y6F6 885 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 CCT4P50991 539 aaKnown RBP14.96□□□□□ -0.01
COL6A3-206ENST00000409809 BCL2L13Q9BXK5 485 aa14.96□□□□□ -0.01
COL6A3-206ENST00000409809 EIF5P55010 431 aaKnown RBP14.96□□□□□ -0.02
COL6A3-206ENST00000409809 TBC1D2BQ9UPU7 963 aa14.96□□□□□ -0.02
COL6A3-206ENST00000409809 TEFQ10587 303 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 SPATS2Q86XZ4 545 aaKnown RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 CCDC6Q16204 474 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 OTUD6BQ8N6M0 293 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 MYOM3Q5VTT5 1437 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 CTDP1Q9Y5B0 961 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 AKNAQ7Z591 1439 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 ZKSCAN5Q9Y2L8 839 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 FSD2A1L4K1 749 aa14.95□□□□□ -0.02
COL6A3-206ENST00000409809 URI1O94763 535 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 XPCQ01831 940 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-206ENST00000409809 NBPF11Q86T75 865 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms