RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 BARGINQ6ZT62 677 aa27.16■■□□□ 1.94
VSX1-203ENST00000409285 RUNDC1Q96C34 613 aa27.16■■□□□ 1.94
VSX1-203ENST00000409285 RXRBP28702 533 aa27.15■■□□□ 1.94
VSX1-203ENST00000409285 RAPGEF4Q8WZA2 1011 aa27.14■■□□□ 1.94
VSX1-203ENST00000409285 CDCA7Q9BWT1 371 aaPredicted RBP27.14■■□□□ 1.94
VSX1-203ENST00000409285 IL2RBP14784 551 aa27.13■■□□□ 1.93
VSX1-203ENST00000409285 RBM6P78332 1123 aaKnown RBP27.13■■□□□ 1.93
VSX1-203ENST00000409285 GJD4Q96KN9 370 aaPredicted RBP27.13■■□□□ 1.93
VSX1-203ENST00000409285 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.13■■□□□ 1.93
VSX1-203ENST00000409285 USP35Q9P2H5 1018 aa27.13■■□□□ 1.93
VSX1-203ENST00000409285 NEFMP07197 916 aa27.12■■□□□ 1.93
VSX1-203ENST00000409285 TATP17735 454 aaPredicted RBP27.12■■□□□ 1.93
VSX1-203ENST00000409285 MAPK8IP3Q9UPT6 1336 aa27.12■■□□□ 1.93
VSX1-203ENST00000409285 ADAMTS7Q9UKP4 1686 aa27.11■■□□□ 1.93
VSX1-203ENST00000409285 CCDC9Q9Y3X0 531 aaKnown RBP27.11■■□□□ 1.93
VSX1-203ENST00000409285 TNS2Q63HR2 1409 aa27.1■■□□□ 1.93
VSX1-203ENST00000409285 CCDC146Q8IYE0 955 aa27.1■■□□□ 1.93
VSX1-203ENST00000409285 SCN11AQ9UI33 1791 aa27.1■■□□□ 1.93
VSX1-203ENST00000409285 AMOTQ4VCS5 1084 aa27.09■■□□□ 1.93
VSX1-203ENST00000409285 PHACTR3Q96KR7 559 aa27.09■■□□□ 1.93
VSX1-203ENST00000409285 BRWD3Q6RI45 1802 aa27.08■■□□□ 1.93
VSX1-203ENST00000409285 NCBP3Q53F19 620 aaKnown RBP27.07■■□□□ 1.92
VSX1-203ENST00000409285 ONECUT3O60422 494 aaPredicted RBP27.06■■□□□ 1.92
VSX1-203ENST00000409285 PLEKHO1Q53GL0 409 aaPredicted RBP27.06■■□□□ 1.92
VSX1-203ENST00000409285 GAS2L2Q8NHY3 880 aa27.06■■□□□ 1.92
VSX1-203ENST00000409285 NGEFQ8N5V2 710 aa27.05■■□□□ 1.92
VSX1-203ENST00000409285 SPG7Q9UQ90 795 aa27.04■■□□□ 1.92
VSX1-203ENST00000409285 APAF1O14727 1248 aa27.03■■□□□ 1.92
VSX1-203ENST00000409285 NFE2L2Q16236 605 aa27.03■■□□□ 1.92
VSX1-203ENST00000409285 MTHFSDQ2M296 383 aaKnown RBP27.03■■□□□ 1.92
VSX1-203ENST00000409285 PCDH11XQ9BZA7 1347 aa27.02■■□□□ 1.92
VSX1-203ENST00000409285 PCDH11YQ9BZA8 1340 aa27.02■■□□□ 1.92
VSX1-203ENST00000409285 TMPOP42166 694 aaKnown RBP27.02■■□□□ 1.92
VSX1-203ENST00000409285 FAM98CQ17RN3 349 aaKnown RBP27.02■■□□□ 1.92
VSX1-203ENST00000409285 SIPA1L3O60292 1781 aaPredicted RBP27.02■■□□□ 1.92
VSX1-203ENST00000409285 ZCRB1Q8TBF4 217 aaKnown RBP27.01■■□□□ 1.91
VSX1-203ENST00000409285 RGS12O14924 1447 aa27■■□□□ 1.91
VSX1-203ENST00000409285 MAP3K5Q99683 1374 aa27■■□□□ 1.91
VSX1-203ENST00000409285 TOGARAM1Q9Y4F4 1720 aa26.99■■□□□ 1.91
VSX1-203ENST00000409285 DDB1Q16531 1140 aa26.98■■□□□ 1.91
VSX1-203ENST00000409285 CCDC27Q2M243 656 aa26.98■■□□□ 1.91
VSX1-203ENST00000409285 ITGB4P16144 1822 aa26.97■■□□□ 1.91
VSX1-203ENST00000409285 EXOC5O00471 708 aa26.97■■□□□ 1.91
VSX1-203ENST00000409285 AKAP4Q5JQC9 854 aa26.97■■□□□ 1.91
VSX1-203ENST00000409285 ZNF530Q6P9A1 599 aaPredicted RBP26.97■■□□□ 1.91
VSX1-203ENST00000409285 DOT1LQ8TEK3 1739 aa26.96■■□□□ 1.91
VSX1-203ENST00000409285 HTATSF1O43719 755 aaKnown RBP26.96■■□□□ 1.91
VSX1-203ENST00000409285 SBF2Q86WG5 1849 aa26.96■■□□□ 1.91
VSX1-203ENST00000409285 CYP27B1O15528 508 aa26.95■■□□□ 1.91
VSX1-203ENST00000409285 PHKG2P15735 406 aa26.95■■□□□ 1.91
VSX1-203ENST00000409285 LMOD3Q0VAK6 560 aa26.95■■□□□ 1.91
VSX1-203ENST00000409285 IFNL2Q8IZJ0 200 aa26.95■■□□□ 1.91
VSX1-203ENST00000409285 EP400Q96L91 3159 aa26.95■■□□□ 1.9
VSX1-203ENST00000409285 RIPK4P57078 832 aa26.94■■□□□ 1.9
VSX1-203ENST00000409285 C1orf141Q5JVX7 400 aa26.94■■□□□ 1.9
VSX1-203ENST00000409285 MRC1P22897 1456 aa26.94■■□□□ 1.9
VSX1-203ENST00000409285 GNAT3A8MTJ3 354 aa26.93■■□□□ 1.9
VSX1-203ENST00000409285 HNRNPUQ00839 825 aaKnown RBP eCLIP26.93■■□□□ 1.9
VSX1-203ENST00000409285 NKX1-1Q15270 411 aaPredicted RBP26.93■■□□□ 1.9
VSX1-203ENST00000409285 RRP7AQ9Y3A4 280 aaKnown RBP26.93■■□□□ 1.9
VSX1-203ENST00000409285 HSP90AB1P08238 724 aaKnown RBP26.92■■□□□ 1.9
VSX1-203ENST00000409285 TRIM35Q9UPQ4 493 aa26.92■■□□□ 1.9
VSX1-203ENST00000409285 CEMIPQ8WUJ3 1361 aa26.92■■□□□ 1.9
VSX1-203ENST00000409285 KDM6AO15550 1401 aaPredicted RBP26.91■■□□□ 1.9
VSX1-203ENST00000409285 SEPT12Q8IYM1 358 aa26.91■■□□□ 1.9
VSX1-203ENST00000409285 ZBED9Q6R2W3 1325 aa26.91■■□□□ 1.9
VSX1-203ENST00000409285 ZNF521Q96K83 1311 aa26.91■■□□□ 1.9
VSX1-203ENST00000409285 BCL9O00512 1426 aa26.9■■□□□ 1.9
VSX1-203ENST00000409285 KAT6BQ8WYB5 2073 aa26.9■■□□□ 1.9
VSX1-203ENST00000409285 NEUROD2Q15784 382 aa26.89■■□□□ 1.9
VSX1-203ENST00000409285 WWC1Q8IX03 1113 aa26.88■■□□□ 1.89
VSX1-203ENST00000409285 DCAF5Q96JK2 942 aa26.88■■□□□ 1.89
VSX1-203ENST00000409285 NHSQ6T4R5 1651 aa26.88■■□□□ 1.89
VSX1-203ENST00000409285 A0A0G2JS52 829 aa26.87■■□□□ 1.89
VSX1-203ENST00000409285 MYT1Q01538 1121 aa26.87■■□□□ 1.89
VSX1-203ENST00000409285 KDM3BQ7LBC6 1761 aa26.87■■□□□ 1.89
VSX1-203ENST00000409285 SOCS7O14512 581 aa26.87■■□□□ 1.89
VSX1-203ENST00000409285 DDX54Q8TDD1 881 aaKnown RBP26.87■■□□□ 1.89
VSX1-203ENST00000409285 RTF1Q92541 710 aaKnown RBP26.87■■□□□ 1.89
VSX1-203ENST00000409285 PAPPAQ13219 1627 aa26.86■■□□□ 1.89
VSX1-203ENST00000409285 MARCH10Q8NA82 808 aaPredicted RBP26.86■■□□□ 1.89
VSX1-203ENST00000409285 PDE3BQ13370 1112 aa26.85■■□□□ 1.89
VSX1-203ENST00000409285 IL17REQ8NFR9 667 aa26.83■■□□□ 1.89
VSX1-203ENST00000409285 RNMTO43148 476 aaKnown RBP26.82■■□□□ 1.88
VSX1-203ENST00000409285 CALD1Q05682 793 aaKnown RBP26.82■■□□□ 1.88
VSX1-203ENST00000409285 MPRIPQ6WCQ1 1025 aa26.82■■□□□ 1.88
VSX1-203ENST00000409285 WDR63Q8IWG1 891 aa26.82■■□□□ 1.88
VSX1-203ENST00000409285 IL16Q14005 1332 aa26.82■■□□□ 1.88
VSX1-203ENST00000409285 SENP3-EIF4A1A0A087X0R7 540 aa26.81■■□□□ 1.88
VSX1-203ENST00000409285 MCM10Q7L590 875 aa26.81■■□□□ 1.88
VSX1-203ENST00000409285 UBR2Q8IWV8 1755 aa26.81■■□□□ 1.88
VSX1-203ENST00000409285 SALL2Q9Y467 1007 aaPredicted RBP26.81■■□□□ 1.88
VSX1-203ENST00000409285 ERVV-2B6SEH9 535 aa26.8■■□□□ 1.88
VSX1-203ENST00000409285 DCTN1Q14203 1278 aa26.8■■□□□ 1.88
VSX1-203ENST00000409285 LGR6Q9HBX8 967 aa26.8■■□□□ 1.88
VSX1-203ENST00000409285 KRT27Q7Z3Y8 459 aa26.79■■□□□ 1.88
VSX1-203ENST00000409285 YTHDC1Q96MU7 727 aaKnown RBP26.79■■□□□ 1.88
VSX1-203ENST00000409285 BTAF1O14981 1849 aa26.78■■□□□ 1.88
VSX1-203ENST00000409285 THUMPD2Q9BTF0 503 aaKnown RBP26.77■■□□□ 1.88
VSX1-203ENST00000409285 SLC52A2Q9HAB3 445 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms