RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 THSD7AQ9UPZ6 1657 aa8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 COL5A2P05997 1499 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 PSEN1P49768 467 aa8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 TERF2IPQ9NYB0 399 aa8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 AXIN2Q9Y2T1 843 aa8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 COL18A1P39060 1754 aa8.09□□□□□ -1.11
HMGB1P20-201ENST00000402555 NFAT5O94916 1531 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 RGPD5Q99666 1765 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 TMF1P82094 1093 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 LCE2DQ5TA82 110 aaPredicted RBP8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 ARHGEF25Q86VW2 580 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 PUS7Q96PZ0 661 aaKnown RBP8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 EDC4Q6P2E9 1401 aaKnown RBP8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 AATKQ6ZMQ8 1374 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 USP31Q70CQ4 1352 aa8.08□□□□□ -1.12
HMGB1P20-201ENST00000402555 POTEMA6NI47 508 aa8.07□□□□□ -1.12
HMGB1P20-201ENST00000402555 PDAP1Q13442 181 aaKnown RBP8.07□□□□□ -1.12
HMGB1P20-201ENST00000402555 DEFB132Q7Z7B7 95 aa8.07□□□□□ -1.12
HMGB1P20-201ENST00000402555 TCP11L2Q8N4U5 519 aa8.07□□□□□ -1.12
HMGB1P20-201ENST00000402555 KCNH5Q8NCM2 988 aa8.07□□□□□ -1.12
HMGB1P20-201ENST00000402555 BLMP54132 1417 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 CRB1P82279 1406 aa8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 USP54Q70EL1 1684 aa8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 POTEGQ6S5H5 508 aa8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 TOM1L2Q6ZVM7 507 aa8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 PDCD7Q8N8D1 485 aaKnown RBP8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 NINLQ9Y2I6 1382 aa8.06□□□□□ -1.12
HMGB1P20-201ENST00000402555 OVOS2A0A0J9YW53 1432 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 OVOS2Q6IE36 1432 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 LTN1O94822 1766 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 CSB-PGBD3P0DP91 1061 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 HSPA5P11021 654 aaKnown RBP8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 FBLN1P23142 703 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 BARGINQ6ZT62 677 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 POLR3GLQ9BT43 218 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 ANKRD36BQ8N2N9 1353 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 MYOM1P52179 1685 aa8.05□□□□□ -1.12
HMGB1P20-201ENST00000402555 WDR17Q8IZU2 1322 aa8.04□□□□□ -1.12
HMGB1P20-201ENST00000402555 SLC24A1O60721 1099 aa8.04□□□□□ -1.12
HMGB1P20-201ENST00000402555 SF3B2Q13435 895 aaKnown RBP8.04□□□□□ -1.12
HMGB1P20-201ENST00000402555 CCDC125Q86Z20 511 aa8.04□□□□□ -1.12
HMGB1P20-201ENST00000402555 TRIM37O94972 964 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 MKRN3Q13064 507 aaKnown RBP8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 PDE3BQ13370 1112 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 CDCA8Q53HL2 280 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 FAM163AQ96GL9 167 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 COG3Q96JB2 828 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 GGNBP2Q9H3C7 697 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 THRAP3Q9Y2W1 955 aaKnown RBP8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 WNK3Q9BYP7 1800 aa8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 PARP4Q9UKK3 1724 aaKnown RBP8.03□□□□□ -1.12
HMGB1P20-201ENST00000402555 FYB1O15117 783 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 EIF4G2P78344 907 aaKnown RBP eCLIP8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 GOLGA2Q08379 1002 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 SLAIN1Q8ND83 568 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 LTV1Q96GA3 475 aaPredicted RBP8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 CARD10Q9BWT7 1032 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 CARD14Q9BXL6 1004 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 NLRP2Q9NX02 1062 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 LRRC37A3O60309 1634 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 ERBB3P21860 1342 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 MAP3K19Q56UN5 1328 aa8.02□□□□□ -1.13
HMGB1P20-201ENST00000402555 KIF20BQ96Q89 1820 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 RGPD1P0DJD0 1748 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 TNS1Q9HBL0 1735 aaKnown RBP8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 EN1Q05925 392 aaPredicted RBP8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 RRS1Q15050 365 aaKnown RBP8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 DDB1Q16531 1140 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 FAM196AQ6ZSG2 479 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 ANKRD24Q8TF21 1146 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 SRCAPQ6ZRS2 3230 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 ABCC6O95255 1503 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 DISP2A7MBM2 1401 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 NSD3Q9BZ95 1437 aa8.01□□□□□ -1.13
HMGB1P20-201ENST00000402555 C11orf95C9JLR9 678 aaPredicted RBP8□□□□□ -1.13
HMGB1P20-201ENST00000402555 BAG6P46379 1132 aa8□□□□□ -1.13
HMGB1P20-201ENST00000402555 AMPHP49418 695 aa8□□□□□ -1.13
HMGB1P20-201ENST00000402555 IP6K1Q92551 441 aa8□□□□□ -1.13
HMGB1P20-201ENST00000402555 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8□□□□□ -1.13
HMGB1P20-201ENST00000402555 CCDC7Q96M83 1385 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 APBA3O96018 575 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 HOXC9P31274 260 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 PTF1AQ7RTS3 328 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 MARCH10Q8NA82 808 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 PEAK1Q9H792 1746 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 RGPD2P0DJD1 1756 aa7.99□□□□□ -1.13
HMGB1P20-201ENST00000402555 OVOS2A0A0G2JMS6 1433 aa7.98□□□□□ -1.13
HMGB1P20-201ENST00000402555 PSDA5PKW4 1024 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P20-201ENST00000402555 EZH2Q15910 746 aaKnown RBP7.98□□□□□ -1.13
HMGB1P20-201ENST00000402555 CDCA7Q9BWT1 371 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P20-201ENST00000402555 SBF2Q86WG5 1849 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 EXOC5O00471 708 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 IL2RBP14784 551 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 USHBP1Q8N6Y0 703 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 L3MBTL3Q96JM7 780 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 CAMKK2Q96RR4 588 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 PANK3Q9H999 370 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 PCDH10Q9P2E7 1040 aa7.97□□□□□ -1.13
HMGB1P20-201ENST00000402555 EMILIN1Q9Y6C2 1016 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms