RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 FCHSD2O94868 740 aa21.27■■□□□ 1
HMGA1-204ENST00000401473 WDR43Q15061 677 aaKnown RBP eCLIP21.26■□□□□ 0.99
HMGA1-204ENST00000401473 PHACTR3Q96KR7 559 aa21.25■□□□□ 0.99
HMGA1-204ENST00000401473 TATP17735 454 aaPredicted RBP21.24■□□□□ 0.99
HMGA1-204ENST00000401473 PRKAR2BP31323 418 aa21.24■□□□□ 0.99
HMGA1-204ENST00000401473 PLEKHF1Q96S99 279 aa21.24■□□□□ 0.99
HMGA1-204ENST00000401473 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
HMGA1-204ENST00000401473 FAM182BQ5T319 152 aa21.24■□□□□ 0.99
HMGA1-204ENST00000401473 WNK3Q9BYP7 1800 aa21.24■□□□□ 0.99
HMGA1-204ENST00000401473 BRWD3Q6RI45 1802 aa21.23■□□□□ 0.99
HMGA1-204ENST00000401473 DDB1Q16531 1140 aa21.23■□□□□ 0.99
HMGA1-204ENST00000401473 EXOC5O00471 708 aa21.22■□□□□ 0.99
HMGA1-204ENST00000401473 KRT27Q7Z3Y8 459 aa21.22■□□□□ 0.99
HMGA1-204ENST00000401473 FAM9BQ8IZU0 186 aa21.22■□□□□ 0.99
HMGA1-204ENST00000401473 OVOS2A0A0G2JMS6 1433 aa21.22■□□□□ 0.99
HMGA1-204ENST00000401473 ZCRB1Q8TBF4 217 aaKnown RBP21.22■□□□□ 0.99
HMGA1-204ENST00000401473 PARP4Q9UKK3 1724 aaKnown RBP21.21■□□□□ 0.99
HMGA1-204ENST00000401473 LRRC37A3O60309 1634 aa21.2■□□□□ 0.98
HMGA1-204ENST00000401473 CCDC146Q8IYE0 955 aa21.2■□□□□ 0.98
HMGA1-204ENST00000401473 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.2■□□□□ 0.98
HMGA1-204ENST00000401473 MTHFSDQ2M296 383 aaKnown RBP21.19■□□□□ 0.98
HMGA1-204ENST00000401473 MARCH10Q8NA82 808 aaPredicted RBP21.19■□□□□ 0.98
HMGA1-204ENST00000401473 CYP27B1O15528 508 aa21.18■□□□□ 0.98
HMGA1-204ENST00000401473 PDE3BQ13370 1112 aa21.18■□□□□ 0.98
HMGA1-204ENST00000401473 DDX54Q8TDD1 881 aaKnown RBP21.18■□□□□ 0.98
HMGA1-204ENST00000401473 TNS2Q63HR2 1409 aa21.18■□□□□ 0.98
HMGA1-204ENST00000401473 PLEKHO1Q53GL0 409 aaPredicted RBP21.18■□□□□ 0.98
HMGA1-204ENST00000401473 AMOTQ4VCS5 1084 aa21.17■□□□□ 0.98
HMGA1-204ENST00000401473 SHANK3Q9BYB0 1731 aa21.16■□□□□ 0.98
HMGA1-204ENST00000401473 SPG7Q9UQ90 795 aa21.16■□□□□ 0.98
HMGA1-204ENST00000401473 KAT6BQ8WYB5 2073 aa21.16■□□□□ 0.98
HMGA1-204ENST00000401473 PKD1L3Q7Z443 1732 aa21.15■□□□□ 0.98
HMGA1-204ENST00000401473 RUNDC1Q96C34 613 aa21.15■□□□□ 0.98
HMGA1-204ENST00000401473 PNNQ9H307 717 aaKnown RBP21.15■□□□□ 0.98
HMGA1-204ENST00000401473 PLEKHG2Q9H7P9 1386 aa21.14■□□□□ 0.97
HMGA1-204ENST00000401473 SENP3-EIF4A1A0A087X0R7 540 aa21.13■□□□□ 0.97
HMGA1-204ENST00000401473 PHKG2P15735 406 aa21.13■□□□□ 0.97
HMGA1-204ENST00000401473 ZNF530Q6P9A1 599 aaPredicted RBP21.13■□□□□ 0.97
HMGA1-204ENST00000401473 PCDH11XQ9BZA7 1347 aa21.12■□□□□ 0.97
HMGA1-204ENST00000401473 PCDH11YQ9BZA8 1340 aa21.12■□□□□ 0.97
HMGA1-204ENST00000401473 IFNL2Q8IZJ0 200 aa21.11■□□□□ 0.97
HMGA1-204ENST00000401473 APAF1O14727 1248 aa21.11■□□□□ 0.97
HMGA1-204ENST00000401473 MAPK8IP3Q9UPT6 1336 aa21.1■□□□□ 0.97
HMGA1-204ENST00000401473 GAS2L2Q8NHY3 880 aa21.1■□□□□ 0.97
HMGA1-204ENST00000401473 NEFMP07197 916 aa21.09■□□□□ 0.97
HMGA1-204ENST00000401473 TMPOP42166 694 aaKnown RBP21.09■□□□□ 0.97
HMGA1-204ENST00000401473 RRP7AQ9Y3A4 280 aaKnown RBP21.09■□□□□ 0.97
HMGA1-204ENST00000401473 NKX1-1Q15270 411 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-204ENST00000401473 AKAP4Q5JQC9 854 aa21.09■□□□□ 0.97
HMGA1-204ENST00000401473 FAM196AQ6ZSG2 479 aa21.09■□□□□ 0.97
HMGA1-204ENST00000401473 DLG5Q8TDM6 1919 aa21.08■□□□□ 0.97
HMGA1-204ENST00000401473 NEUROD2Q15784 382 aa21.08■□□□□ 0.97
HMGA1-204ENST00000401473 NFE2L2Q16236 605 aa21.08■□□□□ 0.97
HMGA1-204ENST00000401473 C1orf141Q5JVX7 400 aa21.08■□□□□ 0.97
HMGA1-204ENST00000401473 MPRIPQ6WCQ1 1025 aa21.08■□□□□ 0.97
HMGA1-204ENST00000401473 PTF1AQ7RTS3 328 aa21.07■□□□□ 0.96
HMGA1-204ENST00000401473 LGR6Q9HBX8 967 aa21.07■□□□□ 0.96
HMGA1-204ENST00000401473 GNAT3A8MTJ3 354 aa21.06■□□□□ 0.96
HMGA1-204ENST00000401473 RIPK4P57078 832 aa21.06■□□□□ 0.96
HMGA1-204ENST00000401473 IL17REQ8NFR9 667 aa21.06■□□□□ 0.96
HMGA1-204ENST00000401473 BCL9O00512 1426 aa21.06■□□□□ 0.96
HMGA1-204ENST00000401473 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
HMGA1-204ENST00000401473 KCNQ2O43526 872 aa21.04■□□□□ 0.96
HMGA1-204ENST00000401473 TRIM37O94972 964 aa21.04■□□□□ 0.96
HMGA1-204ENST00000401473 UPF1Q92900 1129 aaKnown RBP eCLIP21.04■□□□□ 0.967e-23■■■■□ 19.4
HMGA1-204ENST00000401473 MAP3K5Q99683 1374 aa21.04■□□□□ 0.96
HMGA1-204ENST00000401473 KDM6AO15550 1401 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-204ENST00000401473 ACSBG1Q96GR2 724 aa21.03■□□□□ 0.96
HMGA1-204ENST00000401473 DCAF5Q96JK2 942 aa21.03■□□□□ 0.96
HMGA1-204ENST00000401473 TRIM35Q9UPQ4 493 aa21.03■□□□□ 0.96
HMGA1-204ENST00000401473 MCM10Q7L590 875 aa21.03■□□□□ 0.96
HMGA1-204ENST00000401473 VIRMAQ69YN4 1812 aaKnown RBP21.02■□□□□ 0.96
HMGA1-204ENST00000401473 RNMTO43148 476 aaKnown RBP21.02■□□□□ 0.96
HMGA1-204ENST00000401473 SBF2Q86WG5 1849 aa21.01■□□□□ 0.95
HMGA1-204ENST00000401473 HSP90AB1P08238 724 aaKnown RBP21.01■□□□□ 0.95
HMGA1-204ENST00000401473 PRIM1P49642 420 aaKnown RBP21.01■□□□□ 0.95
HMGA1-204ENST00000401473 SALL2Q9Y467 1007 aaPredicted RBP21.01■□□□□ 0.95
HMGA1-204ENST00000401473 THUMPD2Q9BTF0 503 aaKnown RBP21.01■□□□□ 0.95
HMGA1-204ENST00000401473 HTATSF1O43719 755 aaKnown RBP21■□□□□ 0.95
HMGA1-204ENST00000401473 TOGARAM1Q9Y4F4 1720 aa20.99■□□□□ 0.95
HMGA1-204ENST00000401473 SCN11AQ9UI33 1791 aa20.99■□□□□ 0.95
HMGA1-204ENST00000401473 RTF1Q92541 710 aaKnown RBP20.99■□□□□ 0.95
HMGA1-204ENST00000401473 SOCS7O14512 581 aa20.98■□□□□ 0.95
HMGA1-204ENST00000401473 NFATC2IPQ8NCF5 419 aa20.98■□□□□ 0.95
HMGA1-204ENST00000401473 CEMIPQ8WUJ3 1361 aa20.98■□□□□ 0.95
HMGA1-204ENST00000401473 SYTL4Q96C24 671 aaPredicted RBP20.98■□□□□ 0.95
HMGA1-204ENST00000401473 ITGB4P16144 1822 aa20.97■□□□□ 0.95
HMGA1-204ENST00000401473 ADAMTS7Q9UKP4 1686 aa20.97■□□□□ 0.95
HMGA1-204ENST00000401473 ERVV-2B6SEH9 535 aa20.97■□□□□ 0.95
HMGA1-204ENST00000401473 BCL11BQ9C0K0 894 aaPredicted RBP20.97■□□□□ 0.95
HMGA1-204ENST00000401473 DOT1LQ8TEK3 1739 aa20.96■□□□□ 0.95
HMGA1-204ENST00000401473 PIGBQ92521 554 aa20.96■□□□□ 0.95
HMGA1-204ENST00000401473 WWC1Q8IX03 1113 aa20.95■□□□□ 0.94
HMGA1-204ENST00000401473 SLC52A2Q9HAB3 445 aa20.95■□□□□ 0.94
HMGA1-204ENST00000401473 CABP4P57796 275 aa20.94■□□□□ 0.94
HMGA1-204ENST00000401473 CCDC27Q2M243 656 aa20.94■□□□□ 0.94
HMGA1-204ENST00000401473 CCDC125Q86Z20 511 aa20.94■□□□□ 0.94
HMGA1-204ENST00000401473 LMOD3Q0VAK6 560 aa20.93■□□□□ 0.94
HMGA1-204ENST00000401473 NCBP3Q53F19 620 aaKnown RBP20.93■□□□□ 0.94
HMGA1-204ENST00000401473 DEFB132Q7Z7B7 95 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms