RNA–Protein interactions for RNA: ENST00000397102.5

SEC13-206, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-206ENST00000397102 PRIM1P49642 420 aaKnown RBP21.3■■□□□ 1
SEC13-206ENST00000397102 SLC12A5Q9H2X9 1139 aa21.3■■□□□ 1
SEC13-206ENST00000397102 A0A1W2PP64 1363 aa21.3■■□□□ 1
SEC13-206ENST00000397102 RGPD2P0DJD1 1756 aa21.29■■□□□ 1
SEC13-206ENST00000397102 LTV1Q96GA3 475 aaPredicted RBP21.29■■□□□ 1
SEC13-206ENST00000397102 TERF2IPQ9NYB0 399 aa21.29■■□□□ 1
SEC13-206ENST00000397102 YBX3P16989 372 aaKnown RBP eCLIP21.28■■□□□ 11e-7■□□□□ 8.2
SEC13-206ENST00000397102 CCNL1Q9UK58 526 aaPredicted RBP21.27■■□□□ 1
SEC13-206ENST00000397102 NEUROD1Q13562 356 aa21.26■□□□□ 0.99
SEC13-206ENST00000397102 ZCRB1Q8TBF4 217 aaKnown RBP21.25■□□□□ 0.99
SEC13-206ENST00000397102 CARD11Q9BXL7 1154 aa21.25■□□□□ 0.99
SEC13-206ENST00000397102 C5P01031 1676 aa21.24■□□□□ 0.99
SEC13-206ENST00000397102 MEGF6O75095 1541 aa21.24■□□□□ 0.99
SEC13-206ENST00000397102 GOLGB1Q14789 3259 aaKnown RBP21.24■□□□□ 0.99
SEC13-206ENST00000397102 MSH5O43196 834 aa21.24■□□□□ 0.99
SEC13-206ENST00000397102 COL23A1Q86Y22 540 aaPredicted RBP21.24■□□□□ 0.99
SEC13-206ENST00000397102 PUS7Q96PZ0 661 aaKnown RBP21.24■□□□□ 0.99
SEC13-206ENST00000397102 USP47Q96K76 1375 aa21.23■□□□□ 0.99
SEC13-206ENST00000397102 HOXC9P31274 260 aa21.23■□□□□ 0.99
SEC13-206ENST00000397102 MAP3K19Q56UN5 1328 aa21.23■□□□□ 0.99
SEC13-206ENST00000397102 ATP10DQ9P241 1426 aa21.22■□□□□ 0.99
SEC13-206ENST00000397102 COG3Q96JB2 828 aa21.21■□□□□ 0.99
SEC13-206ENST00000397102 TAF1LQ8IZX4 1826 aa21.2■□□□□ 0.98
SEC13-206ENST00000397102 AMPHP49418 695 aa21.2■□□□□ 0.98
SEC13-206ENST00000397102 MSL1Q68DK7 614 aa21.19■□□□□ 0.98
SEC13-206ENST00000397102 CD2APQ9Y5K6 639 aa21.19■□□□□ 0.98
SEC13-206ENST00000397102 RTL1A6NKG5 1358 aa21.19■□□□□ 0.98
SEC13-206ENST00000397102 HMGB2P26583 209 aaKnown RBP21.18■□□□□ 0.98
SEC13-206ENST00000397102 CGNL1Q0VF96 1302 aa21.18■□□□□ 0.98
SEC13-206ENST00000397102 ADCY9O60503 1353 aa21.16■□□□□ 0.98
SEC13-206ENST00000397102 FLAD1Q8NFF5 587 aa21.16■□□□□ 0.98
SEC13-206ENST00000397102 GPBP1L1Q9HC44 474 aaPredicted RBP21.16■□□□□ 0.98
SEC13-206ENST00000397102 FBLN1P23142 703 aa21.15■□□□□ 0.98
SEC13-206ENST00000397102 NBPF6Q5VWK0 638 aa21.14■□□□□ 0.97
SEC13-206ENST00000397102 NBPF4Q96M43 638 aa21.14■□□□□ 0.97
SEC13-206ENST00000397102 SMG6Q86US8 1419 aaKnown RBP21.13■□□□□ 0.97
SEC13-206ENST00000397102 C4BP0C0L5 1744 aa21.13■□□□□ 0.97
SEC13-206ENST00000397102 RAPGEF4Q8WZA2 1011 aa21.13■□□□□ 0.97
SEC13-206ENST00000397102 CEP350Q5VT06 3117 aa21.13■□□□□ 0.97
SEC13-206ENST00000397102 PALLDQ8WX93 1383 aa21.12■□□□□ 0.97
SEC13-206ENST00000397102 TOGARAM1Q9Y4F4 1720 aa21.12■□□□□ 0.97
SEC13-206ENST00000397102 ITGB4P16144 1822 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 PCDH11XQ9BZA7 1347 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 PCDH11YQ9BZA8 1340 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 HSPA6P17066 643 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 TATP17735 454 aaPredicted RBP21.11■□□□□ 0.97
SEC13-206ENST00000397102 USHBP1Q8N6Y0 703 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 UBR3Q6ZT12 1888 aa21.11■□□□□ 0.97
SEC13-206ENST00000397102 RRS1Q15050 365 aaKnown RBP21.1■□□□□ 0.97
SEC13-206ENST00000397102 TESK2Q96S53 571 aa21.09■□□□□ 0.97
SEC13-206ENST00000397102 NSD3Q9BZ95 1437 aa21.07■□□□□ 0.96
SEC13-206ENST00000397102 MPRIPQ6WCQ1 1025 aa21.07■□□□□ 0.96
SEC13-206ENST00000397102 ZNF526Q8TF50 670 aaPredicted RBP21.07■□□□□ 0.96
SEC13-206ENST00000397102 AK7Q96M32 723 aa21.07■□□□□ 0.96
SEC13-206ENST00000397102 PKD1L3Q7Z443 1732 aa21.07■□□□□ 0.96
SEC13-206ENST00000397102 IGSF1Q8N6C5 1336 aa21.06■□□□□ 0.96
SEC13-206ENST00000397102 SLC24A1O60721 1099 aa21.06■□□□□ 0.96
SEC13-206ENST00000397102 SMARCC1Q92922 1105 aaPredicted RBP21.06■□□□□ 0.96
SEC13-206ENST00000397102 INSRP06213 1382 aa21.06■□□□□ 0.96
SEC13-206ENST00000397102 KIF20BQ96Q89 1820 aa21.05■□□□□ 0.96
SEC13-206ENST00000397102 ST20-MTHFSA0A0A6YYL1 179 aa21.04■□□□□ 0.96
SEC13-206ENST00000397102 FYB1O15117 783 aa21.04■□□□□ 0.96
SEC13-206ENST00000397102 AMIGO3Q86WK7 504 aa21.04■□□□□ 0.96
SEC13-206ENST00000397102 GGNBP2Q9H3C7 697 aa21.04■□□□□ 0.96
SEC13-206ENST00000397102 TONSLQ96HA7 1378 aa21.04■□□□□ 0.96
SEC13-206ENST00000397102 MAP2P11137 1827 aaKnown RBP21.04■□□□□ 0.96
SEC13-206ENST00000397102 CICQ96RK0 1608 aaPredicted RBP21.04■□□□□ 0.96
SEC13-206ENST00000397102 FLT4P35916 1363 aa21.03■□□□□ 0.96
SEC13-206ENST00000397102 KIF24Q5T7B8 1368 aa21.03■□□□□ 0.96
SEC13-206ENST00000397102 CYP27B1O15528 508 aa21.03■□□□□ 0.96
SEC13-206ENST00000397102 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.02■□□□□ 0.96
SEC13-206ENST00000397102 PHF14O94880 888 aa21.02■□□□□ 0.96
SEC13-206ENST00000397102 HSP90AB2PQ58FF8 381 aa21.02■□□□□ 0.96
SEC13-206ENST00000397102 SSFA2P28290 1259 aa21.01■□□□□ 0.95
SEC13-206ENST00000397102 KIF3CO14782 793 aa21■□□□□ 0.95
SEC13-206ENST00000397102 WWC3Q9ULE0 1092 aa21■□□□□ 0.95
SEC13-206ENST00000397102 PIGBQ92521 554 aa20.99■□□□□ 0.95
SEC13-206ENST00000397102 KIF13BQ9NQT8 1826 aa20.99■□□□□ 0.95
SEC13-206ENST00000397102 NCAPD2Q15021 1401 aa20.98■□□□□ 0.95
SEC13-206ENST00000397102 SMIM5Q71RC9 77 aa20.98■□□□□ 0.95
SEC13-206ENST00000397102 NKX1-1Q15270 411 aaPredicted RBP20.97■□□□□ 0.95
SEC13-206ENST00000397102 KIAA1551Q9HCM1 1747 aa20.96■□□□□ 0.95
SEC13-206ENST00000397102 LOC102724428A0A0B4J2F2 783 aa20.96■□□□□ 0.95
SEC13-206ENST00000397102 SIK1P57059 783 aa20.96■□□□□ 0.95
SEC13-206ENST00000397102 LINC00116Q8NCU8 138 aa20.96■□□□□ 0.95
SEC13-206ENST00000397102 ANKRD26Q9UPS8 1709 aa20.94■□□□□ 0.94
SEC13-206ENST00000397102 PXDNLA1KZ92 1463 aa20.94■□□□□ 0.94
SEC13-206ENST00000397102 N4BP2Q86UW6 1770 aaPredicted RBP20.93■□□□□ 0.94
SEC13-206ENST00000397102 APLP1P51693 650 aa20.93■□□□□ 0.94
SEC13-206ENST00000397102 TMF1P82094 1093 aa20.93■□□□□ 0.94
SEC13-206ENST00000397102 SPG7Q9UQ90 795 aa20.93■□□□□ 0.94
SEC13-206ENST00000397102 GNPATO15228 680 aa20.92■□□□□ 0.94
SEC13-206ENST00000397102 TMOD3Q9NYL9 352 aa20.92■□□□□ 0.94
SEC13-206ENST00000397102 EMILIN1Q9Y6C2 1016 aa20.91■□□□□ 0.94
SEC13-206ENST00000397102 MMP10P09238 476 aa20.9■□□□□ 0.94
SEC13-206ENST00000397102 ITPK1Q13572 414 aa20.9■□□□□ 0.94
SEC13-206ENST00000397102 TOMM70O94826 608 aa20.89■□□□□ 0.93
SEC13-206ENST00000397102 ATP6V1AP38606 617 aa20.89■□□□□ 0.93
SEC13-206ENST00000397102 TGFB2P61812 414 aa20.89■□□□□ 0.93
SEC13-206ENST00000397102 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.89■□□□□ 0.934e-7■■■□□ 17.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms