RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 NHSL1Q5SYE7 1610 aa11.13□□□□□ -0.63
TDP1-203ENST00000393454 ERBB3P21860 1342 aa11.13□□□□□ -0.63
TDP1-203ENST00000393454 CRYBG1Q9Y4K1 1723 aa11.13□□□□□ -0.63
TDP1-203ENST00000393454 ELL2O00472 640 aaPredicted RBP11.12□□□□□ -0.63
TDP1-203ENST00000393454 HTATSF1O43719 755 aaKnown RBP11.12□□□□□ -0.63
TDP1-203ENST00000393454 PLEKHO1Q53GL0 409 aaPredicted RBP11.12□□□□□ -0.63
TDP1-203ENST00000393454 PRDM11Q9NQV5 511 aa11.12□□□□□ -0.63
TDP1-203ENST00000393454 MAP3K5Q99683 1374 aa11.12□□□□□ -0.63
TDP1-203ENST00000393454 ROBO1Q9Y6N7 1651 aa11.11□□□□□ -0.63
TDP1-203ENST00000393454 CPDO75976 1380 aa11.11□□□□□ -0.63
TDP1-203ENST00000393454 SSH1Q8WYL5 1049 aa11.11□□□□□ -0.63
TDP1-203ENST00000393454 MIS18AQ9NYP9 233 aa11.11□□□□□ -0.63
TDP1-203ENST00000393454 COL18A1P39060 1754 aa11.11□□□□□ -0.63
TDP1-203ENST00000393454 CHL1O00533 1208 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 AMOTQ4VCS5 1084 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 ZNF530Q6P9A1 599 aaPredicted RBP11.1□□□□□ -0.63
TDP1-203ENST00000393454 TSPYL6Q8N831 410 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 CRB1P82279 1406 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 PDE3AQ14432 1141 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 TWISTNBQ3B726 338 aaPredicted RBP11.1□□□□□ -0.63
TDP1-203ENST00000393454 C8orf58Q8NAV2 365 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 PANK1Q8TE04 598 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 TSPYL4Q9UJ04 414 aa11.1□□□□□ -0.63
TDP1-203ENST00000393454 VAMP4O75379 141 aa11.09□□□□□ -0.63
TDP1-203ENST00000393454 ALDH1L2Q3SY69 923 aa11.09□□□□□ -0.63
TDP1-203ENST00000393454 ZKSCAN2Q63HK3 967 aa11.09□□□□□ -0.63
TDP1-203ENST00000393454 RAPGEF4Q8WZA2 1011 aa11.09□□□□□ -0.63
TDP1-203ENST00000393454 C1orf141Q5JVX7 400 aa11.08□□□□□ -0.63
TDP1-203ENST00000393454 IL17REQ8NFR9 667 aa11.08□□□□□ -0.63
TDP1-203ENST00000393454 CLUAP1Q96AJ1 413 aa11.08□□□□□ -0.63
TDP1-203ENST00000393454 ZNF428Q96B54 188 aa11.08□□□□□ -0.63
TDP1-203ENST00000393454 ABCC6O95255 1503 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 CAMTA1Q9Y6Y1 1673 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 TCERG1O14776 1098 aaKnown RBP11.08□□□□□ -0.64
TDP1-203ENST00000393454 TATP17735 454 aaPredicted RBP11.08□□□□□ -0.64
TDP1-203ENST00000393454 PIP4K2BP78356 416 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 AKAP4Q5JQC9 854 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 FTSJ3Q8IY81 847 aaKnown RBP11.08□□□□□ -0.64
TDP1-203ENST00000393454 NOB1Q9ULX3 412 aaKnown RBP11.08□□□□□ -0.64
TDP1-203ENST00000393454 TNNQ9UQP3 1299 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 COG6Q9Y2V7 657 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 NCAPD2Q15021 1401 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 ABCA3Q99758 1704 aa11.08□□□□□ -0.64
TDP1-203ENST00000393454 TOM1O60784 492 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 IPO8O15397 1037 aaKnown RBP11.07□□□□□ -0.64
TDP1-203ENST00000393454 MS4A1P11836 297 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 EVA1CP58658 441 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 TAF7Q15545 349 aaPredicted RBP11.07□□□□□ -0.64
TDP1-203ENST00000393454 KRT24Q2M2I5 525 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 TOM1L2Q6ZVM7 507 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 LGR6Q9HBX8 967 aa11.07□□□□□ -0.64
TDP1-203ENST00000393454 FAM208AQ9UK61 1670 aaKnown RBP11.07□□□□□ -0.64
TDP1-203ENST00000393454 KIF16BQ96L93 1317 aa11.06□□□□□ -0.64
TDP1-203ENST00000393454 DZIP1LQ8IYY4 767 aaKnown RBP11.06□□□□□ -0.64
TDP1-203ENST00000393454 STRN4Q9NRL3 753 aa11.06□□□□□ -0.64
TDP1-203ENST00000393454 LMO7Q8WWI1 1683 aa11.06□□□□□ -0.64
TDP1-203ENST00000393454 AHDC1Q5TGY3 1603 aaPredicted RBP11.05□□□□□ -0.64
TDP1-203ENST00000393454 RLBP1P12271 317 aa11.05□□□□□ -0.64
TDP1-203ENST00000393454 ATF7IPQ6VMQ6 1270 aa11.05□□□□□ -0.64
TDP1-203ENST00000393454 TEFQ10587 303 aa11.05□□□□□ -0.64
TDP1-203ENST00000393454 MRPL50Q8N5N7 158 aaKnown RBP11.05□□□□□ -0.64
TDP1-203ENST00000393454 SPG7Q9UQ90 795 aa11.05□□□□□ -0.64
TDP1-203ENST00000393454 LRRC37A3O60309 1634 aa11.05□□□□□ -0.64
TDP1-203ENST00000393454 WDR17Q8IZU2 1322 aa11.04□□□□□ -0.64
TDP1-203ENST00000393454 UBAP1LF5GYI3 381 aa11.04□□□□□ -0.64
TDP1-203ENST00000393454 RNMTO43148 476 aaKnown RBP11.04□□□□□ -0.64
TDP1-203ENST00000393454 TRIM27P14373 513 aa11.04□□□□□ -0.64
TDP1-203ENST00000393454 PHLPP1O60346 1717 aa11.04□□□□□ -0.64
TDP1-203ENST00000393454 CEMIPQ8WUJ3 1361 aa11.03□□□□□ -0.64
TDP1-203ENST00000393454 MEGF6O75095 1541 aa11.03□□□□□ -0.64
TDP1-203ENST00000393454 BRPF1P55201 1214 aaPredicted RBP11.03□□□□□ -0.64
TDP1-203ENST00000393454 BABAM1Q9NWV8 329 aa11.03□□□□□ -0.64
TDP1-203ENST00000393454 COL5A2P05997 1499 aaPredicted RBP11.03□□□□□ -0.64
TDP1-203ENST00000393454 MVPQ14764 893 aaKnown RBP11.02□□□□□ -0.64
TDP1-203ENST00000393454 LARP1Q6PKG0 1096 aaKnown RBP11.02□□□□□ -0.64
TDP1-203ENST00000393454 ITPRIPQ8IWB1 547 aa11.02□□□□□ -0.64
TDP1-203ENST00000393454 VIRMAQ69YN4 1812 aaKnown RBP11.02□□□□□ -0.65
TDP1-203ENST00000393454 BTBD11A6QL63 1104 aa11.02□□□□□ -0.65
TDP1-203ENST00000393454 BTG4Q9NY30 223 aa11.02□□□□□ -0.65
TDP1-203ENST00000393454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.02□□□□□ -0.654e-6■■■□□ 19.2
TDP1-203ENST00000393454 PHKG2P15735 406 aa11.01□□□□□ -0.65
TDP1-203ENST00000393454 IFNL2Q8IZJ0 200 aa11.01□□□□□ -0.65
TDP1-203ENST00000393454 CARD10Q9BWT7 1032 aa11.01□□□□□ -0.65
TDP1-203ENST00000393454 TMEM57Q8N5G2 664 aa11□□□□□ -0.65
TDP1-203ENST00000393454 ARHGAP45Q92619 1136 aa11□□□□□ -0.65
TDP1-203ENST00000393454 USP35Q9P2H5 1018 aa11□□□□□ -0.65
TDP1-203ENST00000393454 NUTM2BA6NNL0 878 aaPredicted RBP11□□□□□ -0.65
TDP1-203ENST00000393454 NUTM2EB1AL46 878 aaPredicted RBP11□□□□□ -0.65
TDP1-203ENST00000393454 ADAMTS2O95450 1211 aa11□□□□□ -0.65
TDP1-203ENST00000393454 SLC4A2P04920 1241 aa11□□□□□ -0.65
TDP1-203ENST00000393454 NUTM2AQ8IVF1 878 aaPredicted RBP11□□□□□ -0.65
TDP1-203ENST00000393454 NECTIN2Q92692 538 aa11□□□□□ -0.65
TDP1-203ENST00000393454 COL22A1Q8NFW1 1626 aaPredicted RBP11□□□□□ -0.65
TDP1-203ENST00000393454 IL2RBP14784 551 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 AAMPQ13685 434 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 ZCRB1Q8TBF4 217 aaKnown RBP10.99□□□□□ -0.65
TDP1-203ENST00000393454 STK31Q9BXU1 1019 aa10.99□□□□□ -0.65
TDP1-203ENST00000393454 API5Q9BZZ5 524 aaKnown RBP10.99□□□□□ -0.65
TDP1-203ENST00000393454 DDX19BQ9UMR2 479 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms