RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 DNAI1Q9UI46 699 aa13.92□□□□□ -0.18
PTPN1-201ENST00000371621 CDK13Q14004 1512 aaKnown RBP13.91□□□□□ -0.18
PTPN1-201ENST00000371621 ANKRD65E5RJM6 399 aa13.91□□□□□ -0.18
PTPN1-201ENST00000371621 CLGNO14967 610 aa13.91□□□□□ -0.18
PTPN1-201ENST00000371621 TERF2Q15554 542 aa13.91□□□□□ -0.18
PTPN1-201ENST00000371621 SFPQP23246 707 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTPN1-201ENST00000371621 ZSCAN26Q16670 478 aa13.91□□□□□ -0.18
PTPN1-201ENST00000371621 CT47B1P0C2W7 299 aaPredicted RBP13.9□□□□□ -0.18
PTPN1-201ENST00000371621 API5Q9BZZ5 524 aaKnown RBP13.9□□□□□ -0.18
PTPN1-201ENST00000371621 SNAPC4Q5SXM2 1469 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 DHX8Q14562 1220 aaKnown RBP13.9□□□□□ -0.18
PTPN1-201ENST00000371621 ANO6Q4KMQ2 910 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 TICAM2Q86XR7 235 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 THUMPD2Q9BTF0 503 aaKnown RBP13.9□□□□□ -0.18
PTPN1-201ENST00000371621 USP8P40818 1118 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 SYT10Q6XYQ8 523 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 GGNBP2Q9H3C7 697 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 KIAA1107Q9UPP5 1409 aa13.9□□□□□ -0.18
PTPN1-201ENST00000371621 ERCC6LQ2NKX8 1250 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.89□□□□□ -0.192e-7■■■■□ 20.6
PTPN1-201ENST00000371621 SERPINC1P01008 464 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 BRD2P25440 801 aaKnown RBP13.89□□□□□ -0.19
PTPN1-201ENST00000371621 NUCB1Q02818 461 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 ANKRD50Q9ULJ7 1429 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 EIF3JO75822 258 aaKnown RBP13.89□□□□□ -0.19
PTPN1-201ENST00000371621 KIAA0754O94854 1291 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 CASTP20810 708 aaKnown RBP13.89□□□□□ -0.19
PTPN1-201ENST00000371621 RNF20Q5VTR2 975 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 WDR63Q8IWG1 891 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 SLC12A5Q9H2X9 1139 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 RABEP2Q9H5N1 569 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 ST7Q9NRC1 585 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 RNF216Q9NWF9 866 aaPredicted RBP13.89□□□□□ -0.19
PTPN1-201ENST00000371621 VPS18Q9P253 973 aa13.89□□□□□ -0.19
PTPN1-201ENST00000371621 UBE2HP62256 183 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 FKBP5Q13451 457 aaPredicted RBP13.88□□□□□ -0.19
PTPN1-201ENST00000371621 EXOC6BQ9Y2D4 811 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 SART3Q15020 963 aaKnown RBP13.88□□□□□ -0.19
PTPN1-201ENST00000371621 MYCBPQ99417 103 aaPredicted RBP13.88□□□□□ -0.19
PTPN1-201ENST00000371621 NAT10Q9H0A0 1025 aaKnown RBP13.88□□□□□ -0.19
PTPN1-201ENST00000371621 DNAJC25Q9H1X3 360 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 RPRD2Q5VT52 1461 aaKnown RBP13.88□□□□□ -0.19
PTPN1-201ENST00000371621 ZNF710Q8N1W2 664 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 RUFY1Q96T51 708 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 STK31Q9BXU1 1019 aa13.88□□□□□ -0.19
PTPN1-201ENST00000371621 CDR1P51861 262 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 DNM1Q05193 864 aaKnown RBP13.87□□□□□ -0.19
PTPN1-201ENST00000371621 CTR9Q6PD62 1173 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 A0A1B0GUL7 405 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 STK11IPQ8N1F8 1099 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 ARFGAP3Q9NP61 516 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 PTPN23Q9H3S7 1636 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 FAM200AQ8TCP9 573 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 PPFIA3O75145 1194 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 BRPF1P55201 1214 aaPredicted RBP13.87□□□□□ -0.19
PTPN1-201ENST00000371621 ANKRD20A12PQ8NF67 263 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 SLC26A8Q96RN1 970 aa13.87□□□□□ -0.19
PTPN1-201ENST00000371621 STX6O43752 255 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 ME1P48163 572 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 ERBINQ96RT1 1412 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 C14orf37Q86TY3 774 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 IL1RAPL2Q9NP60 686 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 PLEKHH2Q8IVE3 1493 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 IFT140Q96RY7 1462 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 CTTNBP2Q8WZ74 1663 aa13.86□□□□□ -0.19
PTPN1-201ENST00000371621 ISM2Q6H9L7 571 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 DACT1Q9NYF0 836 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 LIG1P18858 919 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 SDSP20132 328 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 NCBP1Q09161 790 aaKnown RBP13.85□□□□□ -0.19
PTPN1-201ENST00000371621 HDAC1Q13547 482 aaPredicted RBP13.85□□□□□ -0.19
PTPN1-201ENST00000371621 JAKMIP3Q5VZ66 844 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 TMC6Q7Z403 805 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 IQGAP2Q13576 1575 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 PER1O15534 1290 aaPredicted RBP13.85□□□□□ -0.19
PTPN1-201ENST00000371621 ERLIN1O75477 346 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 MYCNP04198 464 aaPredicted RBP13.85□□□□□ -0.19
PTPN1-201ENST00000371621 DDX11Q96FC9 970 aa13.85□□□□□ -0.19
PTPN1-201ENST00000371621 BIN1O00499 593 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 NRBP1Q9UHY1 535 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 CFAP100Q494V2 611 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 CCDC91Q7Z6B0 441 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 CNPY4Q8N129 248 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 ZNF428Q96B54 188 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 USP16Q9Y5T5 823 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 EPRSP07814 1512 aaKnown RBP13.84□□□□□ -0.19
PTPN1-201ENST00000371621 KIF2AO00139 706 aaPredicted RBP13.84□□□□□ -0.19
PTPN1-201ENST00000371621 DIAPH1O60610 1272 aaKnown RBP13.84□□□□□ -0.19
PTPN1-201ENST00000371621 RAD51AP2Q09MP3 1159 aa13.84□□□□□ -0.19
PTPN1-201ENST00000371621 HDGFL2Q7Z4V5 671 aaPredicted RBP13.84□□□□□ -0.19
PTPN1-201ENST00000371621 PARD3Q8TEW0 1356 aa13.83□□□□□ -0.19
PTPN1-201ENST00000371621 CCDC69A6NI79 296 aa13.83□□□□□ -0.19
PTPN1-201ENST00000371621 FAM173BQ6P4H8 233 aa13.83□□□□□ -0.19
PTPN1-201ENST00000371621 CWC27Q6UX04 472 aaKnown RBP13.83□□□□□ -0.19
PTPN1-201ENST00000371621 CARMIL2Q6F5E8 1435 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 GNG11P61952 73 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 ERO1AQ96HE7 468 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 PDLIM2Q96JY6 352 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 ABCA5Q8WWZ7 1642 aa13.83□□□□□ -0.2
PTPN1-201ENST00000371621 TYRO3Q06418 890 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms