RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 TNFRSF10AO00220 468 aa12.56□□□□□ -0.4
YBX3-204ENST00000366290 OCSTAMPQ9BR26 566 aa12.56□□□□□ -0.4
YBX3-204ENST00000366290 RAPGEF6Q8TEU7 1601 aa12.55□□□□□ -0.4
YBX3-204ENST00000366290 ZBTB24O43167 697 aaPredicted RBP12.55□□□□□ -0.4
YBX3-204ENST00000366290 CD2BP2O95400 341 aaKnown RBP12.55□□□□□ -0.4
YBX3-204ENST00000366290 TRIM32Q13049 653 aa12.55□□□□□ -0.4
YBX3-204ENST00000366290 ATP10BO94823 1461 aa12.54□□□□□ -0.4
YBX3-204ENST00000366290 SH3BP5LQ7L8J4 393 aa12.54□□□□□ -0.4
YBX3-204ENST00000366290 BAP1Q92560 729 aa12.54□□□□□ -0.4
YBX3-204ENST00000366290 ARHGAP9Q9BRR9 750 aa12.54□□□□□ -0.4
YBX3-204ENST00000366290 FHOD3Q2V2M9 1422 aa12.54□□□□□ -0.4
YBX3-204ENST00000366290 LINC01559Q495D7 138 aa12.53□□□□□ -0.4
YBX3-204ENST00000366290 UCN2Q96RP3 112 aa12.53□□□□□ -0.4
YBX3-204ENST00000366290 NUP153P49790 1475 aaKnown RBP12.53□□□□□ -0.4
YBX3-204ENST00000366290 FOXC1Q12948 553 aa12.52□□□□□ -0.41
YBX3-204ENST00000366290 PPP1R12CQ9BZL4 782 aa12.52□□□□□ -0.41
YBX3-204ENST00000366290 ADGRL1O94910 1474 aa12.52□□□□□ -0.41
YBX3-204ENST00000366290 ADAM32Q8TC27 787 aa12.51□□□□□ -0.41
YBX3-204ENST00000366290 ZNF511Q8NB15 262 aa12.5□□□□□ -0.41
YBX3-204ENST00000366290 PCDHB9Q9Y5E1 797 aa12.5□□□□□ -0.41
YBX3-204ENST00000366290 ARHGAP35Q9NRY4 1499 aa12.5□□□□□ -0.41
YBX3-204ENST00000366290 CFAP43Q8NDM7 1665 aa12.5□□□□□ -0.41
YBX3-204ENST00000366290 PALM3A6NDB9 673 aaPredicted RBP12.49□□□□□ -0.41
YBX3-204ENST00000366290 CFAP70Q5T0N1 1121 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 TRAF7Q6Q0C0 670 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 SH3RF1Q7Z6J0 888 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 ZBTB33Q86T24 672 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 ZNF592Q92610 1267 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 CARD14Q9BXL6 1004 aa12.49□□□□□ -0.41
YBX3-204ENST00000366290 TEX14Q8IWB6 1497 aa12.48□□□□□ -0.41
YBX3-204ENST00000366290 MAGEB6P1A0A0J9YX57 407 aa12.48□□□□□ -0.41
YBX3-204ENST00000366290 BPHLQ86WA6 291 aaPredicted RBP12.48□□□□□ -0.41
YBX3-204ENST00000366290 FOXJ1Q92949 421 aa12.48□□□□□ -0.41
YBX3-204ENST00000366290 MAGI3Q5TCQ9 1506 aa12.47□□□□□ -0.41
YBX3-204ENST00000366290 FMN1Q68DA7 1419 aa12.47□□□□□ -0.41
YBX3-204ENST00000366290 SKOR1P84550 965 aa12.47□□□□□ -0.41
YBX3-204ENST00000366290 AGERQ15109 404 aa12.47□□□□□ -0.41
YBX3-204ENST00000366290 TOR4AQ9NXH8 423 aa12.47□□□□□ -0.41
YBX3-204ENST00000366290 TFIP11Q9UBB9 837 aaKnown RBP12.47□□□□□ -0.41
YBX3-204ENST00000366290 WNT7AO00755 349 aa12.46□□□□□ -0.41
YBX3-204ENST00000366290 RFX1P22670 979 aa12.46□□□□□ -0.41
YBX3-204ENST00000366290 RANGAP1P46060 587 aaPredicted RBP12.46□□□□□ -0.41
YBX3-204ENST00000366290 MCCD1P59942 119 aaPredicted RBP12.46□□□□□ -0.41
YBX3-204ENST00000366290 TBC1D9Q6ZT07 1266 aa12.46□□□□□ -0.41
YBX3-204ENST00000366290 ABCA9Q8IUA7 1624 aa12.46□□□□□ -0.41
YBX3-204ENST00000366290 SH3BP2P78314 561 aa12.45□□□□□ -0.42
YBX3-204ENST00000366290 C4orf48Q5BLP8 95 aa12.45□□□□□ -0.42
YBX3-204ENST00000366290 CD109Q6YHK3 1445 aa12.45□□□□□ -0.42
YBX3-204ENST00000366290 PIK3CDO00329 1044 aa12.44□□□□□ -0.42
YBX3-204ENST00000366290 PPP1R15AO75807 674 aaPredicted RBP12.44□□□□□ -0.42
YBX3-204ENST00000366290 LMOD1P29536 600 aaPredicted RBP12.44□□□□□ -0.42
YBX3-204ENST00000366290 ERFEQ4G0M1 354 aa12.44□□□□□ -0.42
YBX3-204ENST00000366290 CEP126Q9P2H0 1117 aa12.44□□□□□ -0.42
YBX3-204ENST00000366290 FAM187AA6NFU0 413 aa12.43□□□□□ -0.42
YBX3-204ENST00000366290 ATP9BO43861 1147 aa12.43□□□□□ -0.42
YBX3-204ENST00000366290 DGAT1O75907 488 aa12.43□□□□□ -0.42
YBX3-204ENST00000366290 WNT7BP56706 349 aa12.43□□□□□ -0.42
YBX3-204ENST00000366290 PKDCCQ504Y2 493 aa12.43□□□□□ -0.42
YBX3-204ENST00000366290 DZIP3Q86Y13 1208 aaKnown RBP12.43□□□□□ -0.42
YBX3-204ENST00000366290 MAFBQ9Y5Q3 323 aaPredicted RBP12.43□□□□□ -0.42
YBX3-204ENST00000366290 HECW1Q76N89 1606 aa12.42□□□□□ -0.42
YBX3-204ENST00000366290 PBXIP1Q96AQ6 731 aa12.42□□□□□ -0.42
YBX3-204ENST00000366290 MRGPRX2Q96LB1 330 aa12.42□□□□□ -0.42
YBX3-204ENST00000366290 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.41□□□□□ -0.42
YBX3-204ENST00000366290 NFATC2IPQ8NCF5 419 aa12.41□□□□□ -0.42
YBX3-204ENST00000366290 FAM174AQ8TBP5 190 aa12.41□□□□□ -0.42
YBX3-204ENST00000366290 C1QTNF2Q9BXJ5 285 aa12.41□□□□□ -0.42
YBX3-204ENST00000366290 MYT1Q01538 1121 aa12.4□□□□□ -0.42
YBX3-204ENST00000366290 SLFNL1Q499Z3 407 aa12.4□□□□□ -0.42
YBX3-204ENST00000366290 PHLDB1Q86UU1 1377 aa12.4□□□□□ -0.42
YBX3-204ENST00000366290 HECW2Q9P2P5 1572 aa12.39□□□□□ -0.43
YBX3-204ENST00000366290 PLEKHD1A6NEE1 506 aa12.39□□□□□ -0.43
YBX3-204ENST00000366290 SKIP12755 728 aa12.39□□□□□ -0.43
YBX3-204ENST00000366290 SRPK2P78362 688 aaKnown RBP12.39□□□□□ -0.43
YBX3-204ENST00000366290 RC3H1Q5TC82 1133 aaKnown RBP12.39□□□□□ -0.43
YBX3-204ENST00000366290 CYP4X1Q8N118 509 aa12.39□□□□□ -0.43
YBX3-204ENST00000366290 SLC10A4Q96EP9 437 aa12.39□□□□□ -0.43
YBX3-204ENST00000366290 CDK13Q14004 1512 aaKnown RBP12.38□□□□□ -0.43
YBX3-204ENST00000366290 ARAP3Q8WWN8 1544 aa12.38□□□□□ -0.43
YBX3-204ENST00000366290 RNF135Q8IUD6 432 aa12.38□□□□□ -0.43
YBX3-204ENST00000366290 PHTF2Q8N3S3 785 aa12.38□□□□□ -0.43
YBX3-204ENST00000366290 CASKIN1Q8WXD9 1431 aa12.37□□□□□ -0.43
YBX3-204ENST00000366290 LOC105371045A0A1W2PR82 267 aa12.37□□□□□ -0.43
YBX3-204ENST00000366290 NEO1Q92859 1461 aa12.37□□□□□ -0.43
YBX3-204ENST00000366290 LRRIQ1Q96JM4 1722 aa12.37□□□□□ -0.43
YBX3-204ENST00000366290 CLIP1P30622 1438 aa12.37□□□□□ -0.43
YBX3-204ENST00000366290 USP17L5A8MUK1 530 aa12.36□□□□□ -0.43
YBX3-204ENST00000366290 TRMT44Q8IYL2 757 aaKnown RBP12.36□□□□□ -0.43
YBX3-204ENST00000366290 SNIP1Q8TAD8 396 aaKnown RBP12.36□□□□□ -0.43
YBX3-204ENST00000366290 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.36□□□□□ -0.43
YBX3-204ENST00000366290 ACIN1Q9UKV3 1341 aaKnown RBP12.36□□□□□ -0.43
YBX3-204ENST00000366290 USP17L3A6NCW0 530 aa12.35□□□□□ -0.43
YBX3-204ENST00000366290 USP17L4A6NCW7 530 aa12.35□□□□□ -0.43
YBX3-204ENST00000366290 USP17L2Q6R6M4 530 aa12.35□□□□□ -0.43
YBX3-204ENST00000366290 USP17L1Q7RTZ2 530 aa12.35□□□□□ -0.43
YBX3-204ENST00000366290 GIGYF1O75420 1035 aaPredicted RBP12.34□□□□□ -0.43
YBX3-204ENST00000366290 AVPP01185 164 aa12.34□□□□□ -0.43
YBX3-204ENST00000366290 SMPD1P17405 629 aa12.34□□□□□ -0.43
YBX3-204ENST00000366290 VARSP26640 1264 aaKnown RBP12.34□□□□□ -0.43
YBX3-204ENST00000366290 RETREG2Q8NC44 543 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms