RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 NEMFO60524 1076 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 IVLP07476 585 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 NUTM2FA1L443 756 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 FGFR1OPO95684 399 aaKnown RBP10.84□□□□□ -0.67
VPS13A-203ENST00000360280 SPECC1Q5M775 1068 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 HSPA4P34932 840 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC158Q5M9N0 1113 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 ALS2CR12Q96Q35 445 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC150Q8NCX0 1101 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 KRT32Q14532 448 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 DDX46Q7L014 1031 aaKnown RBP10.83□□□□□ -0.68
VPS13A-203ENST00000360280 WDR66Q8TBY9 1149 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 GNAI2P04899 355 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 PAFAH1B1P43034 410 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 ANKS4BQ8N8V4 417 aa10.83□□□□□ -0.68
VPS13A-203ENST00000360280 USO1O60763 962 aaKnown RBP10.82□□□□□ -0.68
VPS13A-203ENST00000360280 NSRP1Q9H0G5 558 aaKnown RBP10.82□□□□□ -0.68
VPS13A-203ENST00000360280 CACNA2D4Q7Z3S7 1137 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 LARP1Q6PKG0 1096 aaKnown RBP10.82□□□□□ -0.68
VPS13A-203ENST00000360280 TSNARE1Q96NA8 513 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 RAPGEF4Q8WZA2 1011 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 PRKCSHP14314 528 aaPredicted RBP10.82□□□□□ -0.68
VPS13A-203ENST00000360280 WIZO95785 1651 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 CEP112Q8N8E3 955 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 TSG101Q99816 390 aa10.82□□□□□ -0.68
VPS13A-203ENST00000360280 ZSCAN31Q96LW9 406 aaPredicted RBP10.82□□□□□ -0.68
VPS13A-203ENST00000360280 POLA1P09884 1462 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-203ENST00000360280 FSD2A1L4K1 749 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 FERMT1Q9BQL6 677 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 KDM4AO75164 1064 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 GTF2A1P52655 376 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-203ENST00000360280 CLIP2Q9UDT6 1046 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 EHBP1Q8NDI1 1231 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 ANO10Q9NW15 660 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 PSME1Q06323 249 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 CTNNA2P26232 953 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 GSDMDP57764 484 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 IKBKGQ9Y6K9 419 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 SYCE3A1L190 88 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 CLGNO14967 610 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 NAP1L3Q99457 506 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-203ENST00000360280 DYNC1I1O14576 645 aa10.81□□□□□ -0.68
VPS13A-203ENST00000360280 TOP1P11387 765 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 STK3Q13188 491 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 CCDC183Q5T5S1 534 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 MCM5P33992 734 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 RBM25P49756 843 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 AIMP1Q12904 312 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 PRDM10Q9NQV6 1147 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 BLOC1S2Q6QNY1 142 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 HOMER2Q9NSB8 354 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 RAPGEF2Q9Y4G8 1499 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 ATP2B2Q01814 1243 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 SUPT6HQ7KZ85 1726 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 SURF6O75683 361 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 DHX57Q6P158 1386 aaKnown RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 PPP4R3AQ6IN85 833 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 NUP88Q99567 741 aaPredicted RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 KIF20AO95235 890 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 NUTM2DQ5VT03 806 aaPredicted RBP10.8□□□□□ -0.68
VPS13A-203ENST00000360280 KIF4BQ2VIQ3 1234 aa10.8□□□□□ -0.68
VPS13A-203ENST00000360280 PABPN1LA6NDY0 278 aaKnown RBP10.79□□□□□ -0.68
VPS13A-203ENST00000360280 HLTFQ14527 1009 aaKnown RBP eCLIP10.79□□□□□ -0.681e-6■■□□□ 13.4
VPS13A-203ENST00000360280 MSL1Q68DK7 614 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 KIF3CO14782 793 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 CCT4P50991 539 aaKnown RBP10.79□□□□□ -0.68
VPS13A-203ENST00000360280 COMMD10Q9Y6G5 202 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 CNNM1Q9NRU3 951 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 RAI14Q9P0K7 980 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 NOL3O60936 208 aaKnown RBP10.79□□□□□ -0.68
VPS13A-203ENST00000360280 ZNF287Q9HBT7 754 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 MINK1Q8N4C8 1332 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-203ENST00000360280 TNIP1Q15025 636 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 PLEKHH2Q8IVE3 1493 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 CCDC6Q16204 474 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 KANK4Q5T7N3 995 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-203ENST00000360280 PAXBP1Q9Y5B6 917 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 ZNF76P36508 570 aa10.79□□□□□ -0.68
VPS13A-203ENST00000360280 CTNNA3Q9UI47 895 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 CEP83Q9Y592 693 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 STMN4Q9H169 189 aaPredicted RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 CCDC160A6NGH7 325 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 FYCO1Q9BQS8 1478 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 HNRNPMP52272 730 aaKnown RBP eCLIP10.78□□□□□ -0.682e-7■■■■□ 26.4
VPS13A-203ENST00000360280 PDE3AQ14432 1141 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 PPP1R14CQ8TAE6 165 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 SSBP05455 408 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 CKAP4Q07065 602 aaKnown RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 UBAC1Q9BSL1 405 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 MPHOSPH10O00566 681 aaKnown RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 IBSPP21815 317 aaPredicted RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 GTF2F1P35269 517 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 RAB34Q9BZG1 259 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 PHAXQ9H814 394 aaKnown RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 CPSF2Q9P2I0 782 aaKnown RBP10.78□□□□□ -0.68
VPS13A-203ENST00000360280 PLVAPQ9BX97 442 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 FBF1Q8TES7 1133 aa10.78□□□□□ -0.68
VPS13A-203ENST00000360280 LMAN1P49257 510 aa10.77□□□□□ -0.68
VPS13A-203ENST00000360280 URI1O94763 535 aaPredicted RBP10.77□□□□□ -0.68
VPS13A-203ENST00000360280 SCAND2PQ9GZW5 306 aaPredicted RBP10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms