RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 CCDC112Q8NEF3 446 aa16.27■□□□□ 0.2
VCP-201ENST00000358901 NAP1L1P55209 391 aaKnown RBP16.27■□□□□ 0.19
VCP-201ENST00000358901 JMYQ8N9B5 988 aa16.27■□□□□ 0.19
VCP-201ENST00000358901 DDX11Q96FC9 970 aa16.27■□□□□ 0.19
VCP-201ENST00000358901 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.19
VCP-201ENST00000358901 BRPF1P55201 1214 aaPredicted RBP16.26■□□□□ 0.19
VCP-201ENST00000358901 GLRX3O76003 335 aaKnown RBP16.26■□□□□ 0.19
VCP-201ENST00000358901 FKBP4Q02790 459 aaKnown RBP eCLIP16.26■□□□□ 0.19
VCP-201ENST00000358901 SERPINC1P01008 464 aa16.26■□□□□ 0.19
VCP-201ENST00000358901 CNNM1Q9NRU3 951 aa16.26■□□□□ 0.19
VCP-201ENST00000358901 TTC39AQ5SRH9 613 aa16.26■□□□□ 0.19
VCP-201ENST00000358901 CUL7Q14999 1698 aa16.25■□□□□ 0.19
VCP-201ENST00000358901 PRPF40BQ6NWY9 871 aaKnown RBP16.25■□□□□ 0.19
VCP-201ENST00000358901 CABP4P57796 275 aa16.25■□□□□ 0.19
VCP-201ENST00000358901 CFAP45Q9UL16 551 aa16.25■□□□□ 0.19
VCP-201ENST00000358901 FBLN1P23142 703 aa16.24■□□□□ 0.19
VCP-201ENST00000358901 GDPD2Q9HCC8 539 aa16.24■□□□□ 0.19
VCP-201ENST00000358901 CEP126Q9P2H0 1117 aa16.24■□□□□ 0.19
VCP-201ENST00000358901 RRP9O43818 475 aaKnown RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 XPCQ01831 940 aaPredicted RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 KRT32Q14532 448 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 TAF7Q15545 349 aaPredicted RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 CAMK4Q16566 473 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 MAP3K11Q16584 847 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 C8orf34Q49A92 452 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 LRRFIP2Q9Y608 721 aaKnown RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 ACBD3Q9H3P7 528 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 STRN4Q9NRL3 753 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 FAM83GA6ND36 823 aa16.23■□□□□ 0.19
VCP-201ENST00000358901 RBM33Q96EV2 1170 aaKnown RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 LARP6Q9BRS8 491 aaKnown RBP16.23■□□□□ 0.19
VCP-201ENST00000358901 FILIP1LQ4L180 1135 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 KIF6Q6ZMV9 814 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 TRIM34Q9BYJ4 488 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 BOLA2Q9H3K6 86 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 C14orf93Q9H972 538 aaKnown RBP16.22■□□□□ 0.19
VCP-201ENST00000358901 CCDC57Q2TAC2 916 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 CEP57L1Q8IYX8 460 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 RUFY1Q96T51 708 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 BAG4O95429 457 aaKnown RBP16.22■□□□□ 0.19
VCP-201ENST00000358901 FAM177A1Q8N128 213 aaPredicted RBP16.22■□□□□ 0.19
VCP-201ENST00000358901 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.22■□□□□ 0.194e-6■■□□□ 13.6
VCP-201ENST00000358901 PARD3Q8TEW0 1356 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 GPATCH8Q9UKJ3 1502 aaKnown RBP16.22■□□□□ 0.19
VCP-201ENST00000358901 OFD1O75665 1012 aa16.22■□□□□ 0.19
VCP-201ENST00000358901 NOS1P29475 1434 aa16.21■□□□□ 0.19
VCP-201ENST00000358901 THOC2Q8NI27 1593 aaKnown RBP16.21■□□□□ 0.19
VCP-201ENST00000358901 SETQ01105 290 aaPredicted RBP16.21■□□□□ 0.19
VCP-201ENST00000358901 FBXO31Q5XUX0 539 aaPredicted RBP16.21■□□□□ 0.19
VCP-201ENST00000358901 GRIN2AQ12879 1464 aa16.21■□□□□ 0.19
VCP-201ENST00000358901 RAB11FIP3O75154 756 aa16.21■□□□□ 0.19
VCP-201ENST00000358901 MBIPQ9NS73 344 aa16.21■□□□□ 0.19
VCP-201ENST00000358901 TNNQ9UQP3 1299 aa16.21■□□□□ 0.19
VCP-201ENST00000358901 ZC3H6P61129 1189 aaKnown RBP16.21■□□□□ 0.18
VCP-201ENST00000358901 TSHZ3Q63HK5 1081 aa16.21■□□□□ 0.18
VCP-201ENST00000358901 TRIM22Q8IYM9 498 aa16.21■□□□□ 0.18
VCP-201ENST00000358901 CCDC85AQ96PX6 553 aaPredicted RBP16.21■□□□□ 0.18
VCP-201ENST00000358901 HDAC1Q13547 482 aaPredicted RBP16.2■□□□□ 0.18
VCP-201ENST00000358901 FLIIQ13045 1269 aa16.2■□□□□ 0.18
VCP-201ENST00000358901 USHBP1Q8N6Y0 703 aa16.2■□□□□ 0.18
VCP-201ENST00000358901 TESK2Q96S53 571 aa16.2■□□□□ 0.18
VCP-201ENST00000358901 SPG7Q9UQ90 795 aa16.2■□□□□ 0.18
VCP-201ENST00000358901 CCP110O43303 1012 aa16.19■□□□□ 0.18
VCP-201ENST00000358901 CAGE1Q8TC20 777 aa16.19■□□□□ 0.18
VCP-201ENST00000358901 USP25Q9UHP3 1055 aa16.19■□□□□ 0.18
VCP-201ENST00000358901 WASLO00401 505 aaPredicted RBP16.19■□□□□ 0.18
VCP-201ENST00000358901 PDIA4P13667 645 aaKnown RBP16.19■□□□□ 0.18
VCP-201ENST00000358901 SAMD1Q6SPF0 538 aaPredicted RBP16.19■□□□□ 0.18
VCP-201ENST00000358901 TOM1L2Q6ZVM7 507 aa16.19■□□□□ 0.18
VCP-201ENST00000358901 CCDC183Q5T5S1 534 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 CCDC8Q9H0W5 538 aaPredicted RBP16.18■□□□□ 0.18
VCP-201ENST00000358901 LIMCH1Q9UPQ0 1083 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 KIF14Q15058 1648 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 RLBP1P12271 317 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 NUCB1Q02818 461 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 CTNNA3Q9UI47 895 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 RALGAPBQ86X10 1494 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 TCEAL9Q9UHQ7 104 aa16.18■□□□□ 0.18
VCP-201ENST00000358901 NUP133Q8WUM0 1156 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 SMARCE1Q969G3 411 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 IL16Q14005 1332 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 TXLNAP40222 546 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 AK7Q96M32 723 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 NACAP1Q9BZK3 213 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 SCAND2PQ9GZW5 306 aaPredicted RBP16.17■□□□□ 0.18
VCP-201ENST00000358901 TTC22Q5TAA0 569 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 DNAAF4Q8WXU2 420 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 PLEKHH1Q9ULM0 1364 aa16.17■□□□□ 0.18
VCP-201ENST00000358901 BIVM-ERCC5R4GMW8 1640 aa16.16■□□□□ 0.18
VCP-201ENST00000358901 KLHL40Q2TBA0 621 aa16.16■□□□□ 0.18
VCP-201ENST00000358901 URB2Q14146 1524 aaKnown RBP16.16■□□□□ 0.18
VCP-201ENST00000358901 PTPRCP08575 1304 aa16.16■□□□□ 0.18
VCP-201ENST00000358901 SH2B1Q9NRF2 756 aaPredicted RBP16.16■□□□□ 0.18
VCP-201ENST00000358901 ADGRL1O94910 1474 aa16.16■□□□□ 0.18
VCP-201ENST00000358901 NSD2O96028 1365 aa16.16■□□□□ 0.18
VCP-201ENST00000358901 RBM27Q9P2N5 1060 aaKnown RBP16.16■□□□□ 0.18
VCP-201ENST00000358901 XRCC6P12956 609 aaKnown RBP eCLIP16.15■□□□□ 0.18
VCP-201ENST00000358901 PPFIBP1Q86W92 1011 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 PANK2Q9BZ23 570 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 PEG3Q9GZU2 1588 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms