RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SUPT6HQ7KZ85 1726 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 SLC4A10Q6U841 1118 aa14.69□□□□□ -0.06
COL6A3-203ENST00000353578 PPP1R12BO60237 982 aaPredicted RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 IFFO1Q0D2I5 559 aa14.69□□□□□ -0.06
COL6A3-203ENST00000353578 SNW1Q13573 536 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 PYM1Q9BRP8 204 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 GOLIM4O00461 696 aa14.69□□□□□ -0.06
COL6A3-203ENST00000353578 DDX58O95786 925 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 FGFR1OPO95684 399 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 STX1AQ16623 288 aa14.69□□□□□ -0.06
COL6A3-203ENST00000353578 CCDC43Q96MW1 224 aaKnown RBP14.69□□□□□ -0.06
COL6A3-203ENST00000353578 MAP2K2P36507 400 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.68□□□□□ -0.067e-8■■■■■ 186.3
COL6A3-203ENST00000353578 SENP3-EIF4A1A0A087X0R7 540 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 LRCH2Q5VUJ6 765 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 USO1O60763 962 aaKnown RBP14.68□□□□□ -0.06
COL6A3-203ENST00000353578 GNAI3P08754 354 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 LMNTD2Q8IXW0 634 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 TACC1O75410 805 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 TOMM22Q9NS69 142 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 LUC7L3O95232 432 aaKnown RBP14.68□□□□□ -0.06
COL6A3-203ENST00000353578 NFXL1Q6ZNB6 911 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 NBPF11Q86T75 865 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 WASF1Q92558 559 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 CEP131Q9UPN4 1083 aa14.68□□□□□ -0.06
COL6A3-203ENST00000353578 ME1P48163 572 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 NOL3O60936 208 aaKnown RBP14.67□□□□□ -0.06
COL6A3-203ENST00000353578 ATP6V1AP38606 617 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 CCDC30Q5VVM6 783 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 HSF2BPO75031 334 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 PLIN1O60240 522 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 G3BP1Q13283 466 aaKnown RBP eCLIP14.67□□□□□ -0.06
COL6A3-203ENST00000353578 CARMIL2Q6F5E8 1435 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 AP1ARQ63HQ0 302 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 FBF1Q8TES7 1133 aa14.67□□□□□ -0.06
COL6A3-203ENST00000353578 STIM2Q9P246 746 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 TSNAXIP1Q2TAA8 658 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 ERICH3Q5RHP9 1530 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 CAPN2P17655 700 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 KAT6BQ8WYB5 2073 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 MAPK8IP2Q13387 824 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 VCXQ9H320 206 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 PHAXQ9H814 394 aaKnown RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 C9orf78Q9NZ63 289 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 XPCQ01831 940 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 EVC2Q86UK5 1308 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 EIF5P55010 431 aaKnown RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 OTUD6BQ8N6M0 293 aa14.66□□□□□ -0.06
COL6A3-203ENST00000353578 SREK1Q8WXA9 508 aaKnown RBP14.66□□□□□ -0.06
COL6A3-203ENST00000353578 VPS53Q5VIR6 699 aa14.65□□□□□ -0.06
COL6A3-203ENST00000353578 C16orf45Q96MC5 204 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-203ENST00000353578 KLHL10Q6JEL2 608 aa14.65□□□□□ -0.06
COL6A3-203ENST00000353578 EIF4G1Q04637 1599 aaKnown RBP14.65□□□□□ -0.06
COL6A3-203ENST00000353578 TRIM22Q8IYM9 498 aa14.65□□□□□ -0.06
COL6A3-203ENST00000353578 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL6A3-203ENST00000353578 NUP133Q8WUM0 1156 aa14.65□□□□□ -0.06
COL6A3-203ENST00000353578 PSMD1Q99460 953 aa14.64□□□□□ -0.07
COL6A3-203ENST00000353578 AKNAQ7Z591 1439 aa14.64□□□□□ -0.07
COL6A3-203ENST00000353578 SLU7O95391 586 aaKnown RBP14.64□□□□□ -0.07
COL6A3-203ENST00000353578 TOP1P11387 765 aaKnown RBP14.64□□□□□ -0.07
COL6A3-203ENST00000353578 LACTBP83111 547 aaPredicted RBP14.64□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC6Q16204 474 aa14.64□□□□□ -0.07
COL6A3-203ENST00000353578 IFI16Q16666 785 aaKnown RBP14.64□□□□□ -0.07
COL6A3-203ENST00000353578 WHAMMP3Q1A5X7 153 aa14.64□□□□□ -0.07
COL6A3-203ENST00000353578 CFAP100Q494V2 611 aa14.64□□□□□ -0.07
COL6A3-203ENST00000353578 CCDC110Q8TBZ0 833 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 HDXQ7Z353 690 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 GOLGA1Q92805 767 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 C10orf67Q8IYJ2 551 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 NKTRP30414 1462 aaKnown RBP14.63□□□□□ -0.07
COL6A3-203ENST00000353578 BUB1BO60566 1050 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-203ENST00000353578 UBE2HP62256 183 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 BANK1Q8NDB2 785 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 CDK5RAP3Q96JB5 506 aa14.63□□□□□ -0.07
COL6A3-203ENST00000353578 ABCC8Q09428 1581 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 KIF1CO43896 1103 aaKnown RBP14.62□□□□□ -0.07
COL6A3-203ENST00000353578 ZNF365Q70YC5 407 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 KIF4BQ2VIQ3 1234 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 CACNA2D3Q8IZS8 1091 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 LNPKQ9C0E8 428 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 NAP1L3Q99457 506 aaPredicted RBP14.62□□□□□ -0.07
COL6A3-203ENST00000353578 USP25Q9UHP3 1055 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 CUX2O14529 1486 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 LARP1BQ659C4 914 aaKnown RBP14.62□□□□□ -0.07
COL6A3-203ENST00000353578 KLHL34Q8N239 644 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 NOLC1Q14978 699 aaKnown RBP eCLIP14.62□□□□□ -0.07
COL6A3-203ENST00000353578 SOGA1O94964 1423 aa14.62□□□□□ -0.07
COL6A3-203ENST00000353578 YEATS4O95619 227 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 CROCCP2Q86T23 111 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 MAP7Q14244 749 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 LRSAM1Q6UWE0 723 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 PANK3Q9H999 370 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 CEP128Q6ZU80 1094 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 PLVAPQ9BX97 442 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 EFCC1Q9HA90 598 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 ATP11AP98196 1134 aa14.61□□□□□ -0.07
COL6A3-203ENST00000353578 ZMAT2Q96NC0 199 aaKnown RBP14.61□□□□□ -0.07
COL6A3-203ENST00000353578 SPATS2LQ9NUQ6 558 aaKnown RBP14.61□□□□□ -0.07
COL6A3-203ENST00000353578 SLC3A2P08195 630 aaKnown RBP14.61□□□□□ -0.07
COL6A3-203ENST00000353578 SLC8A1P32418 973 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms