RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 SCARF2Q96GP6 870 aaPredicted RBP8.09□□□□□ -1.11
CKS1B-201ENST00000308987 PER1O15534 1290 aaPredicted RBP8.08□□□□□ -1.12
CKS1B-201ENST00000308987 ITGA6P23229 1130 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 CCDC116Q8IYX3 515 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 BEGAINQ9BUH8 593 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 TBC1D2Q9BYX2 928 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 MAP4K5Q9Y4K4 846 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 EPRSP07814 1512 aaKnown RBP8.08□□□□□ -1.12
CKS1B-201ENST00000308987 KDM5BQ9UGL1 1544 aa8.08□□□□□ -1.12
CKS1B-201ENST00000308987 ADGRL1O94910 1474 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 PLB1Q6P1J6 1458 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 CDC14CA4D256 554 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 SPINT1O43278 529 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 CBLBQ13191 982 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 SV2AQ7L0J3 742 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 SH3RF1Q7Z6J0 888 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 UGGT2Q9NYU1 1516 aa8.07□□□□□ -1.12
CKS1B-201ENST00000308987 CARMIL2Q6F5E8 1435 aa8.06□□□□□ -1.12
CKS1B-201ENST00000308987 UACAQ9BZF9 1416 aa8.06□□□□□ -1.12
CKS1B-201ENST00000308987 TTLL12Q14166 644 aaPredicted RBP8.06□□□□□ -1.12
CKS1B-201ENST00000308987 TRMT44Q8IYL2 757 aaKnown RBP8.06□□□□□ -1.12
CKS1B-201ENST00000308987 ZBTB3Q9H5J0 574 aa8.06□□□□□ -1.12
CKS1B-201ENST00000308987 KIAA0556O60303 1618 aa8.06□□□□□ -1.12
CKS1B-201ENST00000308987 LYPD4Q6UWN0 246 aa8.05□□□□□ -1.12
CKS1B-201ENST00000308987 Q6ZVU0 165 aa8.05□□□□□ -1.12
CKS1B-201ENST00000308987 CTTNBP2Q8WZ74 1663 aa8.05□□□□□ -1.12
CKS1B-201ENST00000308987 ADAMTS2O95450 1211 aa8.04□□□□□ -1.12
CKS1B-201ENST00000308987 PPP1R26Q5T8A7 1209 aaPredicted RBP8.04□□□□□ -1.12
CKS1B-201ENST00000308987 GIGYF2Q6Y7W6 1299 aaKnown RBP8.04□□□□□ -1.12
CKS1B-201ENST00000308987 ARMC2Q8NEN0 867 aa8.04□□□□□ -1.12
CKS1B-201ENST00000308987 CABLES1Q8TDN4 633 aa8.04□□□□□ -1.12
CKS1B-201ENST00000308987 KDM2AQ9Y2K7 1162 aa8.04□□□□□ -1.12
CKS1B-201ENST00000308987 HECW2Q9P2P5 1572 aa8.03□□□□□ -1.12
CKS1B-201ENST00000308987 MAGEB6P1A0A0J9YX57 407 aa8.03□□□□□ -1.12
CKS1B-201ENST00000308987 ADAM23O75077 832 aa8.03□□□□□ -1.12
CKS1B-201ENST00000308987 DIXDC1Q155Q3 683 aa8.03□□□□□ -1.12
CKS1B-201ENST00000308987 SH3BP5LQ7L8J4 393 aa8.03□□□□□ -1.12
CKS1B-201ENST00000308987 RAPGEF2Q9Y4G8 1499 aa8.02□□□□□ -1.13
CKS1B-201ENST00000308987 MSTNO14793 375 aa8.02□□□□□ -1.13
CKS1B-201ENST00000308987 CTSOP43234 321 aaPredicted RBP8.02□□□□□ -1.13
CKS1B-201ENST00000308987 AMHR2Q16671 573 aa8.02□□□□□ -1.13
CKS1B-201ENST00000308987 PRPF38BQ5VTL8 546 aaKnown RBP8.02□□□□□ -1.13
CKS1B-201ENST00000308987 PGPEP1Q9NXJ5 209 aa8.02□□□□□ -1.13
CKS1B-201ENST00000308987 CELA2BP08218 269 aaPredicted RBP8.01□□□□□ -1.13
CKS1B-201ENST00000308987 PLA2G4EQ3MJ16 856 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 NBPF14Q5TI25 921 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 RIC3Q7Z5B4 369 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 TSC1Q92574 1164 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 CFAP43Q8NDM7 1665 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 ABCA8O94911 1581 aa8.01□□□□□ -1.13
CKS1B-201ENST00000308987 WDR7Q9Y4E6 1490 aa8□□□□□ -1.13
CKS1B-201ENST00000308987 MAP3K10Q02779 954 aa8□□□□□ -1.13
CKS1B-201ENST00000308987 SRSF11Q05519 484 aaKnown RBP8□□□□□ -1.13
CKS1B-201ENST00000308987 CSPP1Q1MSJ5 1256 aa8□□□□□ -1.13
CKS1B-201ENST00000308987 AGBL1Q96MI9 1066 aa8□□□□□ -1.13
CKS1B-201ENST00000308987 SENP3-EIF4A1A0A087X0R7 540 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 ITGB2P05107 769 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 DCAF5Q96JK2 942 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 INSM2Q96T92 566 aaPredicted RBP7.99□□□□□ -1.13
CKS1B-201ENST00000308987 SPOCK3Q9BQ16 436 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 CARD14Q9BXL6 1004 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 KIF21BO75037 1637 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 TEX14Q8IWB6 1497 aa7.99□□□□□ -1.13
CKS1B-201ENST00000308987 ERFEQ4G0M1 354 aa7.98□□□□□ -1.13
CKS1B-201ENST00000308987 CNTNAP5Q8WYK1 1306 aa7.98□□□□□ -1.13
CKS1B-201ENST00000308987 RELBQ01201 579 aa7.97□□□□□ -1.13
CKS1B-201ENST00000308987 GAS6Q14393 721 aa7.97□□□□□ -1.13
CKS1B-201ENST00000308987 MAGI3Q5TCQ9 1506 aa7.97□□□□□ -1.13
CKS1B-201ENST00000308987 NUTM2BA6NNL0 878 aaPredicted RBP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 NUTM2EB1AL46 878 aaPredicted RBP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 QPCTQ16769 361 aa7.96□□□□□ -1.14
CKS1B-201ENST00000308987 NUTM2DQ5VT03 806 aaPredicted RBP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 BARGINQ6ZT62 677 aa7.96□□□□□ -1.14
CKS1B-201ENST00000308987 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 NUTM2AQ8IVF1 878 aaPredicted RBP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 POLMQ9NP87 494 aaPredicted RBP7.96□□□□□ -1.14
CKS1B-201ENST00000308987 ENAMQ9NRM1 1142 aa7.96□□□□□ -1.14
CKS1B-201ENST00000308987 CD109Q6YHK3 1445 aa7.95□□□□□ -1.14
CKS1B-201ENST00000308987 PHF20L1A8MW92 1017 aa7.95□□□□□ -1.14
CKS1B-201ENST00000308987 RNF217Q8TC41 542 aa7.95□□□□□ -1.14
CKS1B-201ENST00000308987 KCTD15Q96SI1 283 aaPredicted RBP7.95□□□□□ -1.14
CKS1B-201ENST00000308987 CUEDC1Q9NWM3 386 aaPredicted RBP7.95□□□□□ -1.14
CKS1B-201ENST00000308987 PRXQ9BXM0 1461 aa7.94□□□□□ -1.14
CKS1B-201ENST00000308987 KRTAP4-8Q9BYQ9 185 aa7.94□□□□□ -1.14
CKS1B-201ENST00000308987 ZNF395Q9H8N7 513 aaPredicted RBP7.94□□□□□ -1.14
CKS1B-201ENST00000308987 ADAMTSL3P82987 1691 aa7.93□□□□□ -1.14
CKS1B-201ENST00000308987 PROCP04070 461 aa7.93□□□□□ -1.14
CKS1B-201ENST00000308987 DHX9Q08211 1270 aaKnown RBP7.93□□□□□ -1.14
CKS1B-201ENST00000308987 VSIG10Q8N0Z9 540 aa7.93□□□□□ -1.14
CKS1B-201ENST00000308987 BEND7Q8N7W2 519 aaPredicted RBP7.93□□□□□ -1.14
CKS1B-201ENST00000308987 GPKOWQ92917 476 aaPredicted RBP eCLIP7.93□□□□□ -1.14
CKS1B-201ENST00000308987 LIMD1Q9UGP4 676 aa7.93□□□□□ -1.14
CKS1B-201ENST00000308987 ABCA9Q8IUA7 1624 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 LILRB3O75022 631 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 PARP9Q8IXQ6 854 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 ATP10BO94823 1461 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 GOLGA3Q08378 1498 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 ARAP3Q8WWN8 1544 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 FRMPD1Q5SYB0 1578 aa7.92□□□□□ -1.14
CKS1B-201ENST00000308987 SAMD9Q5K651 1589 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms