RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 MRS2Q9HD23 443 aa32.67■■■□□ 2.82
HOXC9-201ENST00000303450 LRRC37A3O60309 1634 aa32.66■■■□□ 2.82
HOXC9-201ENST00000303450 BRWD3Q6RI45 1802 aa32.65■■■□□ 2.82
HOXC9-201ENST00000303450 WDR43Q15061 677 aaKnown RBP eCLIP32.64■■■□□ 2.82
HOXC9-201ENST00000303450 KRT27Q7Z3Y8 459 aa32.63■■■□□ 2.81
HOXC9-201ENST00000303450 ZCRB1Q8TBF4 217 aaKnown RBP32.63■■■□□ 2.81
HOXC9-201ENST00000303450 TNS2Q63HR2 1409 aa32.63■■■□□ 2.81
HOXC9-201ENST00000303450 FCHSD2O94868 740 aa32.61■■■□□ 2.81
HOXC9-201ENST00000303450 RSPH6AQ9H0K4 717 aa32.6■■■□□ 2.81
HOXC9-201ENST00000303450 SPG7Q9UQ90 795 aa32.6■■■□□ 2.81
HOXC9-201ENST00000303450 PLEKHG2Q9H7P9 1386 aa32.59■■■□□ 2.81
HOXC9-201ENST00000303450 MIER1Q8N108 512 aa32.59■■■□□ 2.81
HOXC9-201ENST00000303450 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.59■■■□□ 2.81
HOXC9-201ENST00000303450 PRKAR2BP31323 418 aa32.58■■■□□ 2.81
HOXC9-201ENST00000303450 PLEKHO1Q53GL0 409 aaPredicted RBP32.58■■■□□ 2.81
HOXC9-201ENST00000303450 DDX54Q8TDD1 881 aaKnown RBP32.58■■■□□ 2.81
HOXC9-201ENST00000303450 ILDR2Q71H61 639 aa32.57■■■□□ 2.8
HOXC9-201ENST00000303450 AMOTQ4VCS5 1084 aa32.56■■■□□ 2.8
HOXC9-201ENST00000303450 PKD1L3Q7Z443 1732 aa32.56■■■□□ 2.8
HOXC9-201ENST00000303450 PCDH11XQ9BZA7 1347 aa32.55■■■□□ 2.8
HOXC9-201ENST00000303450 PCDH11YQ9BZA8 1340 aa32.55■■■□□ 2.8
HOXC9-201ENST00000303450 MARCH10Q8NA82 808 aaPredicted RBP32.55■■■□□ 2.8
HOXC9-201ENST00000303450 PNNQ9H307 717 aaKnown RBP32.55■■■□□ 2.8
HOXC9-201ENST00000303450 CCER2I3L3R5 266 aa32.54■■■□□ 2.8
HOXC9-201ENST00000303450 ADAMTS8Q9UP79 889 aa32.54■■■□□ 2.8
HOXC9-201ENST00000303450 FAM182BQ5T319 152 aa32.53■■■□□ 2.8
HOXC9-201ENST00000303450 SHANK3Q9BYB0 1731 aa32.52■■■□□ 2.8
HOXC9-201ENST00000303450 NEFMP07197 916 aa32.52■■■□□ 2.8
HOXC9-201ENST00000303450 PNISRQ8TF01 805 aaKnown RBP32.52■■■□□ 2.8
HOXC9-201ENST00000303450 ZNF530Q6P9A1 599 aaPredicted RBP32.5■■■□□ 2.79
HOXC9-201ENST00000303450 CYP27B1O15528 508 aa32.49■■■□□ 2.79
HOXC9-201ENST00000303450 PHACTR3Q96KR7 559 aa32.49■■■□□ 2.79
HOXC9-201ENST00000303450 MTHFSDQ2M296 383 aaKnown RBP32.47■■■□□ 2.79
HOXC9-201ENST00000303450 IFNL2Q8IZJ0 200 aa32.47■■■□□ 2.79
HOXC9-201ENST00000303450 PLEKHF1Q96S99 279 aa32.47■■■□□ 2.79
HOXC9-201ENST00000303450 FAM196AQ6ZSG2 479 aa32.46■■■□□ 2.79
HOXC9-201ENST00000303450 MAPK8IP3Q9UPT6 1336 aa32.46■■■□□ 2.79
HOXC9-201ENST00000303450 PHKG2P15735 406 aa32.46■■■□□ 2.79
HOXC9-201ENST00000303450 C1orf141Q5JVX7 400 aa32.46■■■□□ 2.79
HOXC9-201ENST00000303450 GAS2L2Q8NHY3 880 aa32.45■■■□□ 2.78
HOXC9-201ENST00000303450 CCDC146Q8IYE0 955 aa32.43■■■□□ 2.78
HOXC9-201ENST00000303450 FAM9BQ8IZU0 186 aa32.42■■■□□ 2.78
HOXC9-201ENST00000303450 RUNDC1Q96C34 613 aa32.41■■■□□ 2.78
HOXC9-201ENST00000303450 AKAP4Q5JQC9 854 aa32.41■■■□□ 2.78
HOXC9-201ENST00000303450 KAT6BQ8WYB5 2073 aa32.41■■■□□ 2.78
HOXC9-201ENST00000303450 HSP90AB1P08238 724 aaKnown RBP32.4■■■□□ 2.78
HOXC9-201ENST00000303450 BCL9O00512 1426 aa32.39■■■□□ 2.78
HOXC9-201ENST00000303450 NKX1-1Q15270 411 aaPredicted RBP32.39■■■□□ 2.78
HOXC9-201ENST00000303450 EP400Q96L91 3159 aa32.38■■■□□ 2.77
HOXC9-201ENST00000303450 ACSBG1Q96GR2 724 aa32.36■■■□□ 2.77
HOXC9-201ENST00000303450 DCAF5Q96JK2 942 aa32.35■■■□□ 2.77
HOXC9-201ENST00000303450 GNAT3A8MTJ3 354 aa32.34■■■□□ 2.77
HOXC9-201ENST00000303450 NFE2L2Q16236 605 aa32.34■■■□□ 2.77
HOXC9-201ENST00000303450 MPRIPQ6WCQ1 1025 aa32.34■■■□□ 2.77
HOXC9-201ENST00000303450 MAP3K5Q99683 1374 aa32.34■■■□□ 2.77
HOXC9-201ENST00000303450 SBF2Q86WG5 1849 aa32.33■■■□□ 2.77
HOXC9-201ENST00000303450 TRIM37O94972 964 aa32.31■■■□□ 2.76
HOXC9-201ENST00000303450 SYTL4Q96C24 671 aaPredicted RBP32.31■■■□□ 2.76
HOXC9-201ENST00000303450 DOT1LQ8TEK3 1739 aa32.31■■■□□ 2.76
HOXC9-201ENST00000303450 TMPOP42166 694 aaKnown RBP32.3■■■□□ 2.76
HOXC9-201ENST00000303450 KDM6AO15550 1401 aaPredicted RBP32.29■■■□□ 2.76
HOXC9-201ENST00000303450 PRIM1P49642 420 aaKnown RBP32.29■■■□□ 2.76
HOXC9-201ENST00000303450 RTF1Q92541 710 aaKnown RBP32.29■■■□□ 2.76
HOXC9-201ENST00000303450 KCNQ2O43526 872 aa32.28■■■□□ 2.76
HOXC9-201ENST00000303450 DLG5Q8TDM6 1919 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 APAF1O14727 1248 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 RIPK4P57078 832 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 NEUROD2Q15784 382 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 BCL11BQ9C0K0 894 aaPredicted RBP32.27■■■□□ 2.76
HOXC9-201ENST00000303450 LGR6Q9HBX8 967 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 RRP7AQ9Y3A4 280 aaKnown RBP32.27■■■□□ 2.76
HOXC9-201ENST00000303450 TOGARAM1Q9Y4F4 1720 aa32.27■■■□□ 2.76
HOXC9-201ENST00000303450 RNMTO43148 476 aaKnown RBP32.26■■■□□ 2.76
HOXC9-201ENST00000303450 NHSQ6T4R5 1651 aa32.26■■■□□ 2.75
HOXC9-201ENST00000303450 SCN11AQ9UI33 1791 aa32.26■■■□□ 2.75
HOXC9-201ENST00000303450 ERVV-2B6SEH9 535 aa32.26■■■□□ 2.75
HOXC9-201ENST00000303450 HTATSF1O43719 755 aaKnown RBP32.26■■■□□ 2.75
HOXC9-201ENST00000303450 SF3B2Q13435 895 aaKnown RBP32.24■■■□□ 2.75
HOXC9-201ENST00000303450 PTF1AQ7RTS3 328 aa32.24■■■□□ 2.75
HOXC9-201ENST00000303450 VIRMAQ69YN4 1812 aaKnown RBP32.24■■■□□ 2.75
HOXC9-201ENST00000303450 CABP4P57796 275 aa32.23■■■□□ 2.75
HOXC9-201ENST00000303450 CCDC125Q86Z20 511 aa32.23■■■□□ 2.75
HOXC9-201ENST00000303450 IL17REQ8NFR9 667 aa32.23■■■□□ 2.75
HOXC9-201ENST00000303450 TMOD3Q9NYL9 352 aa32.23■■■□□ 2.75
HOXC9-201ENST00000303450 ITGB4P16144 1822 aa32.22■■■□□ 2.75
HOXC9-201ENST00000303450 UPF1Q92900 1129 aaKnown RBP eCLIP32.22■■■□□ 2.75
HOXC9-201ENST00000303450 LMOD3Q0VAK6 560 aa32.21■■■□□ 2.75
HOXC9-201ENST00000303450 MCM10Q7L590 875 aa32.21■■■□□ 2.75
HOXC9-201ENST00000303450 ADAMTS7Q9UKP4 1686 aa32.2■■■□□ 2.75
HOXC9-201ENST00000303450 DCTN1Q14203 1278 aa32.2■■■□□ 2.74
HOXC9-201ENST00000303450 NFATC2IPQ8NCF5 419 aa32.19■■■□□ 2.74
HOXC9-201ENST00000303450 APBA3O96018 575 aa32.18■■■□□ 2.74
HOXC9-201ENST00000303450 TEFQ10587 303 aa32.18■■■□□ 2.74
HOXC9-201ENST00000303450 PIGBQ92521 554 aa32.18■■■□□ 2.74
HOXC9-201ENST00000303450 SLC52A2Q9HAB3 445 aa32.18■■■□□ 2.74
HOXC9-201ENST00000303450 CEMIPQ8WUJ3 1361 aa32.17■■■□□ 2.74
HOXC9-201ENST00000303450 SENP3-EIF4A1A0A087X0R7 540 aa32.17■■■□□ 2.74
HOXC9-201ENST00000303450 TNS1Q9HBL0 1735 aaKnown RBP32.17■■■□□ 2.74
HOXC9-201ENST00000303450 BTAF1O14981 1849 aa32.17■■■□□ 2.74
HOXC9-201ENST00000303450 TRIM35Q9UPQ4 493 aa32.15■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms