RNA–Protein interactions for RNA: ENST00000295767.9

CHCHD4-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 4, humanhuman

TSL 2 BASIC

Gene CHCHD4, Length 1,603 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD4-201ENST00000295767 SHANK3Q9BYB0 1731 aa36.85■■■■□ 3.49
CHCHD4-201ENST00000295767 TATP17735 454 aaPredicted RBP36.85■■■■□ 3.49
CHCHD4-201ENST00000295767 PLEKHF1Q96S99 279 aa36.85■■■■□ 3.49
CHCHD4-201ENST00000295767 CCDC146Q8IYE0 955 aa36.84■■■■□ 3.49
CHCHD4-201ENST00000295767 RBM6P78332 1123 aaKnown RBP36.83■■■■□ 3.49
CHCHD4-201ENST00000295767 CDCA7Q9BWT1 371 aaPredicted RBP36.81■■■■□ 3.48
CHCHD4-201ENST00000295767 PNNQ9H307 717 aaKnown RBP36.81■■■■□ 3.48
CHCHD4-201ENST00000295767 PLEKHG2Q9H7P9 1386 aa36.81■■■■□ 3.48
CHCHD4-201ENST00000295767 PHACTR3Q96KR7 559 aa36.81■■■■□ 3.48
CHCHD4-201ENST00000295767 RUNDC1Q96C34 613 aa36.78■■■■□ 3.48
CHCHD4-201ENST00000295767 ONECUT3O60422 494 aaPredicted RBP36.77■■■■□ 3.48
CHCHD4-201ENST00000295767 RXRBP28702 533 aa36.77■■■■□ 3.48
CHCHD4-201ENST00000295767 DLG5Q8TDM6 1919 aa36.77■■■■□ 3.48
CHCHD4-201ENST00000295767 MAPK8IP3Q9UPT6 1336 aa36.76■■■■□ 3.48
CHCHD4-201ENST00000295767 BRWD3Q6RI45 1802 aa36.76■■■■□ 3.48
CHCHD4-201ENST00000295767 TNS2Q63HR2 1409 aa36.76■■■■□ 3.47
CHCHD4-201ENST00000295767 A0A0G2JS52 829 aa36.75■■■■□ 3.47
CHCHD4-201ENST00000295767 MYT1Q01538 1121 aa36.75■■■■□ 3.47
CHCHD4-201ENST00000295767 NEFMP07197 916 aa36.74■■■■□ 3.47
CHCHD4-201ENST00000295767 PLEKHO1Q53GL0 409 aaPredicted RBP36.74■■■■□ 3.47
CHCHD4-201ENST00000295767 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36.74■■■■□ 3.47
CHCHD4-201ENST00000295767 ZCRB1Q8TBF4 217 aaKnown RBP36.73■■■■□ 3.47
CHCHD4-201ENST00000295767 MTHFSDQ2M296 383 aaKnown RBP36.72■■■■□ 3.47
CHCHD4-201ENST00000295767 AMOTQ4VCS5 1084 aa36.72■■■■□ 3.47
CHCHD4-201ENST00000295767 SPG7Q9UQ90 795 aa36.72■■■■□ 3.47
CHCHD4-201ENST00000295767 DDB1Q16531 1140 aa36.71■■■■□ 3.47
CHCHD4-201ENST00000295767 SEPT12Q8IYM1 358 aa36.7■■■■□ 3.47
CHCHD4-201ENST00000295767 EXOC5O00471 708 aa36.7■■■■□ 3.47
CHCHD4-201ENST00000295767 VIRMAQ69YN4 1812 aaKnown RBP36.69■■■■□ 3.46
CHCHD4-201ENST00000295767 RGS12O14924 1447 aa36.68■■■■□ 3.46
CHCHD4-201ENST00000295767 PCDH11XQ9BZA7 1347 aa36.67■■■■□ 3.46
CHCHD4-201ENST00000295767 PCDH11YQ9BZA8 1340 aa36.67■■■■□ 3.46
CHCHD4-201ENST00000295767 APAF1O14727 1248 aa36.67■■■■□ 3.46
CHCHD4-201ENST00000295767 ZNF530Q6P9A1 599 aaPredicted RBP36.67■■■■□ 3.46
CHCHD4-201ENST00000295767 GAS2L2Q8NHY3 880 aa36.67■■■■□ 3.46
CHCHD4-201ENST00000295767 SENP3-EIF4A1A0A087X0R7 540 aa36.64■■■■□ 3.46
CHCHD4-201ENST00000295767 CYP27B1O15528 508 aa36.64■■■■□ 3.46
CHCHD4-201ENST00000295767 NFE2L2Q16236 605 aa36.64■■■■□ 3.46
CHCHD4-201ENST00000295767 DDX54Q8TDD1 881 aaKnown RBP36.63■■■■□ 3.45
CHCHD4-201ENST00000295767 TMPOP42166 694 aaKnown RBP36.63■■■■□ 3.45
CHCHD4-201ENST00000295767 RRP7AQ9Y3A4 280 aaKnown RBP36.63■■■■□ 3.45
CHCHD4-201ENST00000295767 PHKG2P15735 406 aa36.6■■■■□ 3.45
CHCHD4-201ENST00000295767 C1orf141Q5JVX7 400 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 IFNL2Q8IZJ0 200 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 SCN11AQ9UI33 1791 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 MAP3K5Q99683 1374 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 PDE3BQ13370 1112 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 NEUROD2Q15784 382 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 AKAP4Q5JQC9 854 aa36.59■■■■□ 3.45
CHCHD4-201ENST00000295767 MARCH10Q8NA82 808 aaPredicted RBP36.57■■■■□ 3.44
CHCHD4-201ENST00000295767 ADAMTS7Q9UKP4 1686 aa36.56■■■■□ 3.44
CHCHD4-201ENST00000295767 RIPK4P57078 832 aa36.56■■■■□ 3.44
CHCHD4-201ENST00000295767 TOGARAM1Q9Y4F4 1720 aa36.55■■■■□ 3.44
CHCHD4-201ENST00000295767 GNAT3A8MTJ3 354 aa36.54■■■■□ 3.44
CHCHD4-201ENST00000295767 DOT1LQ8TEK3 1739 aa36.53■■■■□ 3.44
CHCHD4-201ENST00000295767 KDM6AO15550 1401 aaPredicted RBP36.52■■■■□ 3.44
CHCHD4-201ENST00000295767 KRT27Q7Z3Y8 459 aa36.52■■■■□ 3.44
CHCHD4-201ENST00000295767 KAT6BQ8WYB5 2073 aa36.5■■■■□ 3.43
CHCHD4-201ENST00000295767 NKX1-1Q15270 411 aaPredicted RBP36.5■■■■□ 3.43
CHCHD4-201ENST00000295767 MPRIPQ6WCQ1 1025 aa36.5■■■■□ 3.43
CHCHD4-201ENST00000295767 SALL2Q9Y467 1007 aaPredicted RBP36.5■■■■□ 3.43
CHCHD4-201ENST00000295767 FAM182BQ5T319 152 aa36.49■■■■□ 3.43
CHCHD4-201ENST00000295767 HSP90AB1P08238 724 aaKnown RBP36.48■■■■□ 3.43
CHCHD4-201ENST00000295767 TRIM35Q9UPQ4 493 aa36.48■■■■□ 3.43
CHCHD4-201ENST00000295767 ITGB4P16144 1822 aa36.48■■■■□ 3.43
CHCHD4-201ENST00000295767 SBF2Q86WG5 1849 aa36.48■■■■□ 3.43
CHCHD4-201ENST00000295767 HTATSF1O43719 755 aaKnown RBP36.47■■■■□ 3.43
CHCHD4-201ENST00000295767 RTF1Q92541 710 aaKnown RBP36.47■■■■□ 3.43
CHCHD4-201ENST00000295767 DCAF5Q96JK2 942 aa36.47■■■■□ 3.43
CHCHD4-201ENST00000295767 HNRNPUQ00839 825 aaKnown RBP eCLIP36.46■■■■□ 3.43
CHCHD4-201ENST00000295767 DCTN1Q14203 1278 aa36.46■■■■□ 3.43
CHCHD4-201ENST00000295767 LMOD3Q0VAK6 560 aa36.45■■■■□ 3.43
CHCHD4-201ENST00000295767 MCM10Q7L590 875 aa36.45■■■■□ 3.43
CHCHD4-201ENST00000295767 LGR6Q9HBX8 967 aa36.45■■■■□ 3.43
CHCHD4-201ENST00000295767 RNMTO43148 476 aaKnown RBP36.45■■■■□ 3.42
CHCHD4-201ENST00000295767 IL17REQ8NFR9 667 aa36.45■■■■□ 3.42
CHCHD4-201ENST00000295767 NCBP3Q53F19 620 aaKnown RBP36.44■■■■□ 3.42
CHCHD4-201ENST00000295767 SIPA1L3O60292 1781 aaPredicted RBP36.44■■■■□ 3.42
CHCHD4-201ENST00000295767 CCDC27Q2M243 656 aa36.42■■■■□ 3.42
CHCHD4-201ENST00000295767 THUMPD2Q9BTF0 503 aaKnown RBP36.42■■■■□ 3.42
CHCHD4-201ENST00000295767 CEMIPQ8WUJ3 1361 aa36.42■■■■□ 3.42
CHCHD4-201ENST00000295767 BCL9O00512 1426 aa36.41■■■■□ 3.42
CHCHD4-201ENST00000295767 NGEFQ8N5V2 710 aa36.41■■■■□ 3.42
CHCHD4-201ENST00000295767 MRC1P22897 1456 aa36.4■■■■□ 3.42
CHCHD4-201ENST00000295767 WWC1Q8IX03 1113 aa36.39■■■■□ 3.42
CHCHD4-201ENST00000295767 NHSQ6T4R5 1651 aa36.39■■■■□ 3.42
CHCHD4-201ENST00000295767 ACSBG1Q96GR2 724 aa36.35■■■■□ 3.41
CHCHD4-201ENST00000295767 ERVV-2B6SEH9 535 aa36.34■■■■□ 3.41
CHCHD4-201ENST00000295767 FAM196AQ6ZSG2 479 aa36.34■■■■□ 3.41
CHCHD4-201ENST00000295767 YTHDC1Q96MU7 727 aaKnown RBP36.34■■■■□ 3.41
CHCHD4-201ENST00000295767 EP400Q96L91 3159 aa36.34■■■■□ 3.41
CHCHD4-201ENST00000295767 ZNF521Q96K83 1311 aa36.33■■■■□ 3.41
CHCHD4-201ENST00000295767 SLC52A2Q9HAB3 445 aa36.32■■■■□ 3.4
CHCHD4-201ENST00000295767 PRIM1P49642 420 aaKnown RBP36.31■■■■□ 3.4
CHCHD4-201ENST00000295767 TEFQ10587 303 aa36.31■■■■□ 3.4
CHCHD4-201ENST00000295767 CABP4P57796 275 aa36.3■■■■□ 3.4
CHCHD4-201ENST00000295767 SYTL4Q96C24 671 aaPredicted RBP36.3■■■■□ 3.4
CHCHD4-201ENST00000295767 BTAF1O14981 1849 aa36.29■■■■□ 3.4
CHCHD4-201ENST00000295767 KCNQ2O43526 872 aa36.29■■■■□ 3.4
CHCHD4-201ENST00000295767 NFATC2IPQ8NCF5 419 aa36.29■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms