RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PIK3C2GO75747 1445 aa11.69□□□□□ -0.54
COL6A3-201ENST00000295550 DHX8Q14562 1220 aaKnown RBP11.68□□□□□ -0.54
COL6A3-201ENST00000295550 RALYLQ86SE5 291 aaKnown RBP11.68□□□□□ -0.54
COL6A3-201ENST00000295550 PSMA5P28066 241 aa11.68□□□□□ -0.54
COL6A3-201ENST00000295550 LRRCC1Q9C099 1032 aa11.68□□□□□ -0.54
COL6A3-201ENST00000295550 GRPEL1Q9HAV7 217 aa11.68□□□□□ -0.54
COL6A3-201ENST00000295550 GNAI2P04899 355 aa11.68□□□□□ -0.54
COL6A3-201ENST00000295550 ZNHIT6Q9NWK9 470 aaKnown RBP11.68□□□□□ -0.54
COL6A3-201ENST00000295550 FILIP1LQ4L180 1135 aa11.68□□□□□ -0.54
COL6A3-201ENST00000295550 NOS1P29475 1434 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 PDCP20941 246 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 NECTIN2Q92692 538 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 FMNL2Q96PY5 1086 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 INSRP06213 1382 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 TMPOP42166 694 aaKnown RBP11.67□□□□□ -0.54
COL6A3-201ENST00000295550 MCM4P33991 863 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 BRPF1P55201 1214 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-201ENST00000295550 CCDC192P0DO97 292 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 HIP1O00291 1037 aa11.67□□□□□ -0.54
COL6A3-201ENST00000295550 BLMP54132 1417 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-201ENST00000295550 ANKRD62A6NC57 917 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 GBP2P32456 591 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-201ENST00000295550 MEX3CQ5U5Q3 659 aaKnown RBP11.66□□□□□ -0.54
COL6A3-201ENST00000295550 ANKRD36BQ8N2N9 1353 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 DISP1Q96F81 1524 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 TARBP1Q13395 1621 aaKnown RBP11.66□□□□□ -0.54
COL6A3-201ENST00000295550 TAX1BP1Q86VP1 789 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 MAGI3Q5TCQ9 1506 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 LUC7LQ9NQ29 371 aaKnown RBP11.66□□□□□ -0.54
COL6A3-201ENST00000295550 CABP1Q9NZU7 370 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 RBM33Q96EV2 1170 aaKnown RBP11.66□□□□□ -0.54
COL6A3-201ENST00000295550 TXLNBQ8N3L3 684 aa11.66□□□□□ -0.54
COL6A3-201ENST00000295550 FIBPO43427 364 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 XBP1P17861 261 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 NFE2L2Q16236 605 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 PPFIBP1Q86W92 1011 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 TMEM57Q8N5G2 664 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 SRCIN1Q9C0H9 1055 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 KIF1BO60333 1816 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 NEK4P51957 841 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 SLC26A8Q96RN1 970 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 ERC1Q8IUD2 1116 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 CCDC181Q5TID7 509 aa11.65□□□□□ -0.54
COL6A3-201ENST00000295550 ZNF396Q96N95 335 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-201ENST00000295550 CFAP65Q6ZU64 1925 aaKnown RBP11.65□□□□□ -0.55
COL6A3-201ENST00000295550 CROCC2H7BZ55 1655 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 PIP4K2AP48426 406 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-201ENST00000295550 CCDC102AQ96A19 550 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 PLEKHH1Q9ULM0 1364 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 TRHP20396 242 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-201ENST00000295550 TXLNAP40222 546 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 SHROOM2Q13796 1616 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 PRPF40AO75400 957 aaKnown RBP11.64□□□□□ -0.55
COL6A3-201ENST00000295550 SYCP1Q15431 976 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 CCAR1Q8IX12 1150 aaKnown RBP11.64□□□□□ -0.55
COL6A3-201ENST00000295550 TNMDQ9H2S6 317 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 PLCH2O75038 1416 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 ZNF692Q9BU19 519 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-201ENST00000295550 CDK5RAP3Q96JB5 506 aa11.64□□□□□ -0.55
COL6A3-201ENST00000295550 AEBP1Q8IUX7 1158 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 IL16Q14005 1332 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 SERPINC1P01008 464 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 FAM69CQ0P6D2 419 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 DDX11Q96FC9 970 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 WDR33Q9C0J8 1336 aaKnown RBP11.63□□□□□ -0.55
COL6A3-201ENST00000295550 PLXNC1O60486 1568 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 KDM6BO15054 1643 aa11.63□□□□□ -0.55
COL6A3-201ENST00000295550 SSH1Q8WYL5 1049 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL6A3-201ENST00000295550 SLC4A2P04920 1241 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 FAM177A1Q8N128 213 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-201ENST00000295550 PSME1Q06323 249 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 PDCL2Q8N4E4 241 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 PRDM10Q9NQV6 1147 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 SYNMO15061 1565 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 STIM1Q13586 685 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 ABCC2Q92887 1545 aa11.62□□□□□ -0.55
COL6A3-201ENST00000295550 CD109Q6YHK3 1445 aa11.61□□□□□ -0.55
COL6A3-201ENST00000295550 LRRFIP2Q9Y608 721 aaKnown RBP11.61□□□□□ -0.55
COL6A3-201ENST00000295550 POLR3AO14802 1390 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-201ENST00000295550 MPNDQ8N594 471 aa11.61□□□□□ -0.55
COL6A3-201ENST00000295550 A2MP01023 1474 aa11.61□□□□□ -0.55
COL6A3-201ENST00000295550 ADGRF5Q8IZF2 1346 aa11.61□□□□□ -0.55
COL6A3-201ENST00000295550 SART3Q15020 963 aaKnown RBP11.61□□□□□ -0.55
COL6A3-201ENST00000295550 FSD1Q9BTV5 496 aa11.61□□□□□ -0.55
COL6A3-201ENST00000295550 STK38Q15208 465 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 CEBPZQ03701 1054 aaKnown RBP11.6□□□□□ -0.55
COL6A3-201ENST00000295550 TRIM27P14373 513 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 JMYQ8N9B5 988 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 TBC1D32Q96NH3 1257 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 ZNF518AQ6AHZ1 1483 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 ESPNB1AK53 854 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 SULT6B1Q6IMI4 303 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 RPAP2Q8IXW5 612 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-201ENST00000295550 ADCY10Q96PN6 1610 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 CBFA2T2O43439 604 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 TICAM2Q86XR7 235 aa11.6□□□□□ -0.55
COL6A3-201ENST00000295550 CEP170Q5SW79 1584 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 SHTN1A0MZ66 631 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 TBC1D2Q9BYX2 928 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms