RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RGPD1P0DJD0 1748 aa21.68■■□□□ 1.06
CPSF4-201ENST00000292476 CHRNA2Q15822 529 aa21.68■■□□□ 1.06
CPSF4-201ENST00000292476 ARHGEF25Q86VW2 580 aa21.68■■□□□ 1.06
CPSF4-201ENST00000292476 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.68■■□□□ 1.06
CPSF4-201ENST00000292476 IGSF1Q8N6C5 1336 aa21.67■■□□□ 1.06
CPSF4-201ENST00000292476 NWD2Q9ULI1 1742 aa21.67■■□□□ 1.06
CPSF4-201ENST00000292476 ATRNO75882 1429 aa21.67■■□□□ 1.06
CPSF4-201ENST00000292476 ANP32AP39687 249 aaKnown RBP21.67■■□□□ 1.06
CPSF4-201ENST00000292476 BTG4Q9NY30 223 aa21.66■■□□□ 1.06
CPSF4-201ENST00000292476 TRIM35Q9UPQ4 493 aa21.66■■□□□ 1.06
CPSF4-201ENST00000292476 KDRP35968 1356 aa21.66■■□□□ 1.06
CPSF4-201ENST00000292476 LTN1O94822 1766 aa21.66■■□□□ 1.06
CPSF4-201ENST00000292476 RBM6P78332 1123 aaKnown RBP21.66■■□□□ 1.06
CPSF4-201ENST00000292476 ZBTB7CA1YPR0 619 aa21.65■■□□□ 1.06
CPSF4-201ENST00000292476 PHACTR3Q96KR7 559 aa21.65■■□□□ 1.06
CPSF4-201ENST00000292476 CRBNQ96SW2 442 aa21.65■■□□□ 1.06
CPSF4-201ENST00000292476 EYA1Q99502 592 aa21.64■■□□□ 1.05
CPSF4-201ENST00000292476 NRAPQ86VF7 1730 aa21.64■■□□□ 1.05
CPSF4-201ENST00000292476 SPINK5Q9NQ38 1064 aaPredicted RBP21.63■■□□□ 1.05
CPSF4-201ENST00000292476 CT47B1P0C2W7 299 aaPredicted RBP21.63■■□□□ 1.05
CPSF4-201ENST00000292476 NOP58Q9Y2X3 529 aaKnown RBP21.63■■□□□ 1.05
CPSF4-201ENST00000292476 SOCS7O14512 581 aa21.62■■□□□ 1.05
CPSF4-201ENST00000292476 CCDC9Q9Y3X0 531 aaKnown RBP21.62■■□□□ 1.05
CPSF4-201ENST00000292476 CPDO75976 1380 aa21.61■■□□□ 1.05
CPSF4-201ENST00000292476 PLIN1O60240 522 aa21.61■■□□□ 1.05
CPSF4-201ENST00000292476 AEBP1Q8IUX7 1158 aa21.61■■□□□ 1.05
CPSF4-201ENST00000292476 GJD4Q96KN9 370 aaPredicted RBP21.61■■□□□ 1.05
CPSF4-201ENST00000292476 RGS12O14924 1447 aa21.6■■□□□ 1.05
CPSF4-201ENST00000292476 GAS2L2Q8NHY3 880 aa21.6■■□□□ 1.05
CPSF4-201ENST00000292476 IPO9Q96P70 1041 aaKnown RBP21.6■■□□□ 1.05
CPSF4-201ENST00000292476 ABCC6O95255 1503 aa21.59■■□□□ 1.05
CPSF4-201ENST00000292476 GLI3P10071 1580 aa21.59■■□□□ 1.05
CPSF4-201ENST00000292476 VPS72Q15906 364 aa21.59■■□□□ 1.05
CPSF4-201ENST00000292476 STRN4Q9NRL3 753 aa21.59■■□□□ 1.05
CPSF4-201ENST00000292476 LTV1Q96GA3 475 aaPredicted RBP21.58■■□□□ 1.05
CPSF4-201ENST00000292476 KDM2BQ8NHM5 1336 aa21.58■■□□□ 1.04
CPSF4-201ENST00000292476 CENPQQ7L2Z9 268 aaPredicted RBP21.57■■□□□ 1.04
CPSF4-201ENST00000292476 LMO7Q8WWI1 1683 aa21.57■■□□□ 1.04
CPSF4-201ENST00000292476 CAMTA1Q9Y6Y1 1673 aa21.57■■□□□ 1.04
CPSF4-201ENST00000292476 GNAI1P63096 354 aa21.56■■□□□ 1.04
CPSF4-201ENST00000292476 HTATSF1O43719 755 aaKnown RBP21.56■■□□□ 1.04
CPSF4-201ENST00000292476 IFT57Q9NWB7 429 aa21.56■■□□□ 1.04
CPSF4-201ENST00000292476 BACH2Q9BYV9 841 aa21.55■■□□□ 1.04
CPSF4-201ENST00000292476 PDE4AP27815 886 aa21.54■■□□□ 1.04
CPSF4-201ENST00000292476 EVA1CP58658 441 aa21.54■■□□□ 1.04
CPSF4-201ENST00000292476 ANKRD24Q8TF21 1146 aa21.54■■□□□ 1.04
CPSF4-201ENST00000292476 RTF1Q92541 710 aaKnown RBP21.54■■□□□ 1.04
CPSF4-201ENST00000292476 C20orf194Q5TEA3 1177 aa21.53■■□□□ 1.04
CPSF4-201ENST00000292476 COL18A1P39060 1754 aa21.53■■□□□ 1.04
CPSF4-201ENST00000292476 ZNF428Q96B54 188 aa21.52■■□□□ 1.04
CPSF4-201ENST00000292476 RGPD5Q99666 1765 aa21.52■■□□□ 1.03
CPSF4-201ENST00000292476 NBPF6Q5VWK0 638 aa21.51■■□□□ 1.03
CPSF4-201ENST00000292476 NBPF4Q96M43 638 aa21.51■■□□□ 1.03
CPSF4-201ENST00000292476 CFAP44Q96MT7 982 aa21.51■■□□□ 1.03
CPSF4-201ENST00000292476 COL5A2P05997 1499 aaPredicted RBP21.51■■□□□ 1.03
CPSF4-201ENST00000292476 SPATA31A5Q5VU36 1347 aa21.51■■□□□ 1.03
CPSF4-201ENST00000292476 SPATA31A7Q8IWB4 1347 aa21.51■■□□□ 1.03
CPSF4-201ENST00000292476 MTHFSDQ2M296 383 aaKnown RBP21.5■■□□□ 1.03
CPSF4-201ENST00000292476 LARP1Q6PKG0 1096 aaKnown RBP21.5■■□□□ 1.03
CPSF4-201ENST00000292476 USP35Q9P2H5 1018 aa21.5■■□□□ 1.03
CPSF4-201ENST00000292476 AXIN2Q9Y2T1 843 aa21.5■■□□□ 1.03
CPSF4-201ENST00000292476 ERBB3P21860 1342 aa21.5■■□□□ 1.03
CPSF4-201ENST00000292476 AMOTQ4VCS5 1084 aa21.5■■□□□ 1.03
CPSF4-201ENST00000292476 NCAPD2Q15021 1401 aa21.49■■□□□ 1.03
CPSF4-201ENST00000292476 DLG5Q8TDM6 1919 aa21.49■■□□□ 1.03
CPSF4-201ENST00000292476 A0A0G2JS52 829 aa21.49■■□□□ 1.03
CPSF4-201ENST00000292476 ZNF853P0CG23 659 aa21.49■■□□□ 1.03
CPSF4-201ENST00000292476 FAM98CQ17RN3 349 aaKnown RBP21.49■■□□□ 1.03
CPSF4-201ENST00000292476 PLEKHG2Q9H7P9 1386 aa21.49■■□□□ 1.03
CPSF4-201ENST00000292476 PDE3AQ14432 1141 aa21.48■■□□□ 1.03
CPSF4-201ENST00000292476 SPATA31A1Q5TZJ5 1347 aa21.48■■□□□ 1.03
CPSF4-201ENST00000292476 GNAT3A8MTJ3 354 aa21.47■■□□□ 1.03
CPSF4-201ENST00000292476 PLEKHO1Q53GL0 409 aaPredicted RBP21.47■■□□□ 1.03
CPSF4-201ENST00000292476 TSR2Q969E8 191 aaKnown RBP21.47■■□□□ 1.03
CPSF4-201ENST00000292476 ZBTB47Q9UFB7 747 aaPredicted RBP21.47■■□□□ 1.03
CPSF4-201ENST00000292476 RARSP54136 660 aaKnown RBP21.47■■□□□ 1.03
CPSF4-201ENST00000292476 SEPT12Q8IYM1 358 aa21.47■■□□□ 1.03
CPSF4-201ENST00000292476 LAS1LQ9Y4W2 734 aaKnown RBP21.47■■□□□ 1.03
CPSF4-201ENST00000292476 BRWD3Q6RI45 1802 aa21.46■■□□□ 1.03
CPSF4-201ENST00000292476 EXOSC9Q06265 439 aaKnown RBP21.46■■□□□ 1.03
CPSF4-201ENST00000292476 AAMPQ13685 434 aa21.46■■□□□ 1.03
CPSF4-201ENST00000292476 FAM208AQ9UK61 1670 aaKnown RBP21.44■■□□□ 1.02
CPSF4-201ENST00000292476 MAP3K5Q99683 1374 aa21.44■■□□□ 1.02
CPSF4-201ENST00000292476 USHBP1Q8N6Y0 703 aa21.44■■□□□ 1.02
CPSF4-201ENST00000292476 CSB-PGBD3P0DP91 1061 aa21.44■■□□□ 1.02
CPSF4-201ENST00000292476 THUMPD2Q9BTF0 503 aaKnown RBP21.44■■□□□ 1.02
CPSF4-201ENST00000292476 ONECUT3O60422 494 aaPredicted RBP21.43■■□□□ 1.02
CPSF4-201ENST00000292476 CANXP27824 592 aaKnown RBP21.43■■□□□ 1.02
CPSF4-201ENST00000292476 TOM1L2Q6ZVM7 507 aa21.43■■□□□ 1.02
CPSF4-201ENST00000292476 BABAM1Q9NWV8 329 aa21.43■■□□□ 1.02
CPSF4-201ENST00000292476 CRB1P82279 1406 aa21.43■■□□□ 1.02
CPSF4-201ENST00000292476 ALDH1L2Q3SY69 923 aa21.42■■□□□ 1.02
CPSF4-201ENST00000292476 MBIPQ9NS73 344 aa21.42■■□□□ 1.02
CPSF4-201ENST00000292476 CHL1O00533 1208 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 BCAR3O75815 825 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 DCTN1Q14203 1278 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 MCM10Q7L590 875 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 RAPGEF4Q8WZA2 1011 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 NLRP2Q9NX02 1062 aa21.41■■□□□ 1.02
CPSF4-201ENST00000292476 WDR17Q8IZU2 1322 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms