RNA–Protein interactions for RNA: ENST00000265304.10

SSBP1-201, Transcript of single stranded DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSBP1, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-201ENST00000265304 USHBP1Q8N6Y0 703 aa19.05■□□□□ 0.64
SSBP1-201ENST00000265304 PLEKHF1Q96S99 279 aa19.05■□□□□ 0.64
SSBP1-201ENST00000265304 CCDC9Q9Y3X0 531 aaKnown RBP19.05■□□□□ 0.64
SSBP1-201ENST00000265304 U2SURPO15042 1029 aaKnown RBP19.04■□□□□ 0.64
SSBP1-201ENST00000265304 FAM98CQ17RN3 349 aaKnown RBP19.04■□□□□ 0.64
SSBP1-201ENST00000265304 RAPGEF4Q8WZA2 1011 aa19.04■□□□□ 0.64
SSBP1-201ENST00000265304 USP35Q9P2H5 1018 aa19.04■□□□□ 0.64
SSBP1-201ENST00000265304 ADAMTS8Q9UP79 889 aa19.04■□□□□ 0.64
SSBP1-201ENST00000265304 TATP17735 454 aaPredicted RBP19.03■□□□□ 0.64
SSBP1-201ENST00000265304 PNNQ9H307 717 aaKnown RBP19.03■□□□□ 0.64
SSBP1-201ENST00000265304 TNS2Q63HR2 1409 aa19.02■□□□□ 0.64
SSBP1-201ENST00000265304 HMOX1P09601 288 aa19.02■□□□□ 0.64
SSBP1-201ENST00000265304 AMOTQ4VCS5 1084 aa19.02■□□□□ 0.64
SSBP1-201ENST00000265304 BCL9O00512 1426 aa19.01■□□□□ 0.63
SSBP1-201ENST00000265304 SEPT12Q8IYM1 358 aa19.01■□□□□ 0.63
SSBP1-201ENST00000265304 RGS12O14924 1447 aa19■□□□□ 0.63
SSBP1-201ENST00000265304 EXOC5O00471 708 aa19■□□□□ 0.63
SSBP1-201ENST00000265304 WDR43Q15061 677 aaKnown RBP eCLIP19■□□□□ 0.63
SSBP1-201ENST00000265304 ZCRB1Q8TBF4 217 aaKnown RBP19■□□□□ 0.63
SSBP1-201ENST00000265304 PRKAR2BP31323 418 aa18.99■□□□□ 0.63
SSBP1-201ENST00000265304 DLG5Q8TDM6 1919 aa18.99■□□□□ 0.63
SSBP1-201ENST00000265304 ADAMTS7Q9UKP4 1686 aa18.98■□□□□ 0.63
SSBP1-201ENST00000265304 NKX1-1Q15270 411 aaPredicted RBP18.98■□□□□ 0.63
SSBP1-201ENST00000265304 DDB1Q16531 1140 aa18.98■□□□□ 0.63
SSBP1-201ENST00000265304 NCBP3Q53F19 620 aaKnown RBP18.98■□□□□ 0.63
SSBP1-201ENST00000265304 PLEKHO1Q53GL0 409 aaPredicted RBP18.98■□□□□ 0.63
SSBP1-201ENST00000265304 PHACTR3Q96KR7 559 aa18.98■□□□□ 0.63
SSBP1-201ENST00000265304 SPG7Q9UQ90 795 aa18.98■□□□□ 0.63
SSBP1-201ENST00000265304 VIRMAQ69YN4 1812 aaKnown RBP18.97■□□□□ 0.63
SSBP1-201ENST00000265304 SBF2Q86WG5 1849 aa18.96■□□□□ 0.63
SSBP1-201ENST00000265304 CYP27B1O15528 508 aa18.96■□□□□ 0.63
SSBP1-201ENST00000265304 RUNDC1Q96C34 613 aa18.96■□□□□ 0.63
SSBP1-201ENST00000265304 MARCH10Q8NA82 808 aaPredicted RBP18.95■□□□□ 0.62
SSBP1-201ENST00000265304 PCDH11XQ9BZA7 1347 aa18.95■□□□□ 0.62
SSBP1-201ENST00000265304 PCDH11YQ9BZA8 1340 aa18.95■□□□□ 0.62
SSBP1-201ENST00000265304 KAT6BQ8WYB5 2073 aa18.94■□□□□ 0.62
SSBP1-201ENST00000265304 SCN11AQ9UI33 1791 aa18.94■□□□□ 0.62
SSBP1-201ENST00000265304 MTHFSDQ2M296 383 aaKnown RBP18.94■□□□□ 0.62
SSBP1-201ENST00000265304 PHKG2P15735 406 aa18.93■□□□□ 0.62
SSBP1-201ENST00000265304 IFNL2Q8IZJ0 200 aa18.93■□□□□ 0.62
SSBP1-201ENST00000265304 GAS2L2Q8NHY3 880 aa18.93■□□□□ 0.62
SSBP1-201ENST00000265304 HTATSF1O43719 755 aaKnown RBP18.92■□□□□ 0.62
SSBP1-201ENST00000265304 KRT27Q7Z3Y8 459 aa18.92■□□□□ 0.62
SSBP1-201ENST00000265304 PDE3BQ13370 1112 aa18.91■□□□□ 0.62
SSBP1-201ENST00000265304 NFE2L2Q16236 605 aa18.91■□□□□ 0.62
SSBP1-201ENST00000265304 AKAP4Q5JQC9 854 aa18.91■□□□□ 0.62
SSBP1-201ENST00000265304 EP400Q96L91 3159 aa18.91■□□□□ 0.62
SSBP1-201ENST00000265304 NGEFQ8N5V2 710 aa18.9■□□□□ 0.62
SSBP1-201ENST00000265304 ITGB4P16144 1822 aa18.9■□□□□ 0.62
SSBP1-201ENST00000265304 HSP90AB1P08238 724 aaKnown RBP18.89■□□□□ 0.61
SSBP1-201ENST00000265304 TMPOP42166 694 aaKnown RBP18.89■□□□□ 0.61
SSBP1-201ENST00000265304 ZNF530Q6P9A1 599 aaPredicted RBP18.89■□□□□ 0.61
SSBP1-201ENST00000265304 NEFMP07197 916 aa18.88■□□□□ 0.61
SSBP1-201ENST00000265304 FAM9BQ8IZU0 186 aa18.88■□□□□ 0.61
SSBP1-201ENST00000265304 DCAF5Q96JK2 942 aa18.88■□□□□ 0.61
SSBP1-201ENST00000265304 CEMIPQ8WUJ3 1361 aa18.88■□□□□ 0.61
SSBP1-201ENST00000265304 TOGARAM1Q9Y4F4 1720 aa18.88■□□□□ 0.61
SSBP1-201ENST00000265304 SIPA1L3O60292 1781 aaPredicted RBP18.88■□□□□ 0.61
SSBP1-201ENST00000265304 GNAT3A8MTJ3 354 aa18.87■□□□□ 0.61
SSBP1-201ENST00000265304 FAM196AQ6ZSG2 479 aa18.87■□□□□ 0.61
SSBP1-201ENST00000265304 DDX54Q8TDD1 881 aaKnown RBP18.87■□□□□ 0.61
SSBP1-201ENST00000265304 MAP3K5Q99683 1374 aa18.87■□□□□ 0.61
SSBP1-201ENST00000265304 MAPK8IP3Q9UPT6 1336 aa18.87■□□□□ 0.61
SSBP1-201ENST00000265304 KDM6AO15550 1401 aaPredicted RBP18.86■□□□□ 0.61
SSBP1-201ENST00000265304 CCDC27Q2M243 656 aa18.86■□□□□ 0.61
SSBP1-201ENST00000265304 CCDC146Q8IYE0 955 aa18.86■□□□□ 0.61
SSBP1-201ENST00000265304 MRC1P22897 1456 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 ERVV-2B6SEH9 535 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 APAF1O14727 1248 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 C1orf141Q5JVX7 400 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 IL17REQ8NFR9 667 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 NHSQ6T4R5 1651 aa18.85■□□□□ 0.61
SSBP1-201ENST00000265304 A0A0G2JS52 829 aa18.84■□□□□ 0.61
SSBP1-201ENST00000265304 MYT1Q01538 1121 aa18.84■□□□□ 0.61
SSBP1-201ENST00000265304 TRIM35Q9UPQ4 493 aa18.84■□□□□ 0.61
SSBP1-201ENST00000265304 DOT1LQ8TEK3 1739 aa18.83■□□□□ 0.61
SSBP1-201ENST00000265304 RNMTO43148 476 aaKnown RBP18.83■□□□□ 0.6
SSBP1-201ENST00000265304 RIPK4P57078 832 aa18.82■□□□□ 0.6
SSBP1-201ENST00000265304 LMOD3Q0VAK6 560 aa18.81■□□□□ 0.6
SSBP1-201ENST00000265304 LGR6Q9HBX8 967 aa18.81■□□□□ 0.6
SSBP1-201ENST00000265304 MPRIPQ6WCQ1 1025 aa18.8■□□□□ 0.6
SSBP1-201ENST00000265304 BTAF1O14981 1849 aa18.79■□□□□ 0.6
SSBP1-201ENST00000265304 BCL11BQ9C0K0 894 aaPredicted RBP18.79■□□□□ 0.6
SSBP1-201ENST00000265304 ZNF521Q96K83 1311 aa18.78■□□□□ 0.6
SSBP1-201ENST00000265304 TNS1Q9HBL0 1735 aaKnown RBP18.78■□□□□ 0.6
SSBP1-201ENST00000265304 FAM182BQ5T319 152 aa18.78■□□□□ 0.6
SSBP1-201ENST00000265304 ILDR2Q71H61 639 aa18.78■□□□□ 0.6
SSBP1-201ENST00000265304 SLC52A2Q9HAB3 445 aa18.78■□□□□ 0.6
SSBP1-201ENST00000265304 PRIM1P49642 420 aaKnown RBP18.77■□□□□ 0.6
SSBP1-201ENST00000265304 WWC1Q8IX03 1113 aa18.77■□□□□ 0.6
SSBP1-201ENST00000265304 RTF1Q92541 710 aaKnown RBP18.77■□□□□ 0.6
SSBP1-201ENST00000265304 BABAM1Q9NWV8 329 aa18.77■□□□□ 0.6
SSBP1-201ENST00000265304 RGPD3A6NKT7 1758 aaPredicted RBP18.76■□□□□ 0.59
SSBP1-201ENST00000265304 RGPD4Q7Z3J3 1758 aa18.76■□□□□ 0.59
SSBP1-201ENST00000265304 PAPPAQ13219 1627 aa18.76■□□□□ 0.59
SSBP1-201ENST00000265304 CCDC125Q86Z20 511 aa18.76■□□□□ 0.59
SSBP1-201ENST00000265304 RRP7AQ9Y3A4 280 aaKnown RBP18.76■□□□□ 0.59
SSBP1-201ENST00000265304 KCNQ2O43526 872 aa18.75■□□□□ 0.59
SSBP1-201ENST00000265304 PIGBQ92521 554 aa18.75■□□□□ 0.59
SSBP1-201ENST00000265304 ZNF831Q5JPB2 1677 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms