RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ESCO1Q5FWF5 840 aa13.31□□□□□ -0.28
PTPN4-201ENST00000263708 LUZP1Q86V48 1076 aa13.31□□□□□ -0.28
PTPN4-201ENST00000263708 AEBP1Q8IUX7 1158 aa13.31□□□□□ -0.28
PTPN4-201ENST00000263708 ZSCAN25Q6NSZ9 544 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 UQCRHLA0A096LP55 91 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 UQCRHP07919 91 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 MCM2P49736 904 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 NLRP6P59044 892 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 LRP2BPQ9P2M1 347 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 GNAI3P08754 354 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 ZBED9Q6R2W3 1325 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 RNF187Q5TA31 235 aaPredicted RBP13.3□□□□□ -0.28
PTPN4-201ENST00000263708 TSNARE1Q96NA8 513 aa13.3□□□□□ -0.28
PTPN4-201ENST00000263708 KANK4Q5T7N3 995 aaPredicted RBP13.3□□□□□ -0.28
PTPN4-201ENST00000263708 BMS1Q14692 1282 aaKnown RBP13.29□□□□□ -0.28
PTPN4-201ENST00000263708 TSG101Q99816 390 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 GNAI2P04899 355 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 RBM25P49756 843 aaKnown RBP13.29□□□□□ -0.28
PTPN4-201ENST00000263708 LMAN1P49257 510 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 ZNF354CQ86Y25 554 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 LARP1BQ659C4 914 aaKnown RBP13.29□□□□□ -0.28
PTPN4-201ENST00000263708 SPATA32Q96LK8 384 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 CASQ1P31415 396 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 CACNA2D4Q7Z3S7 1137 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 TIGD1Q96MW7 591 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 PLEKHO1Q53GL0 409 aaPredicted RBP13.29□□□□□ -0.28
PTPN4-201ENST00000263708 CRACR2BQ8N4Y2 399 aaPredicted RBP13.29□□□□□ -0.28
PTPN4-201ENST00000263708 KRT85P78386 507 aa13.29□□□□□ -0.28
PTPN4-201ENST00000263708 PIP4K2BP78356 416 aa13.28□□□□□ -0.28
PTPN4-201ENST00000263708 VPS36Q86VN1 386 aa13.28□□□□□ -0.28
PTPN4-201ENST00000263708 UPF3BQ9BZI7 483 aaKnown RBP13.28□□□□□ -0.28
PTPN4-201ENST00000263708 IMMTQ16891 758 aaKnown RBP13.28□□□□□ -0.28
PTPN4-201ENST00000263708 APBB1IPQ7Z5R6 666 aaPredicted RBP13.28□□□□□ -0.28
PTPN4-201ENST00000263708 TOM1L2Q6ZVM7 507 aa13.28□□□□□ -0.28
PTPN4-201ENST00000263708 CEP131Q9UPN4 1083 aa13.28□□□□□ -0.28
PTPN4-201ENST00000263708 CFAP100Q494V2 611 aa13.27□□□□□ -0.28
PTPN4-201ENST00000263708 CBX1P83916 185 aa13.27□□□□□ -0.28
PTPN4-201ENST00000263708 RGS22Q8NE09 1264 aa13.27□□□□□ -0.28
PTPN4-201ENST00000263708 RAB3IL1Q8TBN0 382 aa13.27□□□□□ -0.28
PTPN4-201ENST00000263708 MAP9Q49MG5 647 aa13.27□□□□□ -0.29
PTPN4-201ENST00000263708 CABP2Q9NPB3 220 aa13.27□□□□□ -0.29
PTPN4-201ENST00000263708 FKBP15Q5T1M5 1219 aa13.27□□□□□ -0.29
PTPN4-201ENST00000263708 KLHL10Q6JEL2 608 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 PUF60Q9UHX1 559 aaKnown RBP13.26□□□□□ -0.29
PTPN4-201ENST00000263708 SMTNL1A8MU46 457 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 TATP17735 454 aaPredicted RBP13.26□□□□□ -0.29
PTPN4-201ENST00000263708 PPP1R14CQ8TAE6 165 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 TRMT1LQ7Z2T5 733 aaKnown RBP13.26□□□□□ -0.29
PTPN4-201ENST00000263708 POLR3DP05423 398 aaPredicted RBP13.26□□□□□ -0.29
PTPN4-201ENST00000263708 FILIP1Q7Z7B0 1213 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 AACSQ86V21 672 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 WASF1Q92558 559 aa13.26□□□□□ -0.29
PTPN4-201ENST00000263708 TMX1Q9H3N1 280 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 GAS2L2Q8NHY3 880 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 BAZ1AQ9NRL2 1556 aaPredicted RBP13.25□□□□□ -0.29
PTPN4-201ENST00000263708 CUL5Q93034 780 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 GGNBP2Q9H3C7 697 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 WIZO95785 1651 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 CCDC96Q2M329 555 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 DDX11Q96FC9 970 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 ANKIB1Q9P2G1 1089 aa13.25□□□□□ -0.29
PTPN4-201ENST00000263708 WDR33Q9C0J8 1336 aaKnown RBP13.24□□□□□ -0.29
PTPN4-201ENST00000263708 CYB5RLQ6IPT4 315 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 CCDC175P0C221 793 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 CCDC85AQ96PX6 553 aaPredicted RBP13.24□□□□□ -0.29
PTPN4-201ENST00000263708 OTUD6BQ8N6M0 293 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 FERMT1Q9BQL6 677 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 CAMK4Q16566 473 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 TAOK3Q9H2K8 898 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 ABCF2Q9UG63 623 aa13.24□□□□□ -0.29
PTPN4-201ENST00000263708 SPTY2D1Q68D10 685 aaPredicted RBP13.24□□□□□ -0.29
PTPN4-201ENST00000263708 IDH1O75874 414 aaKnown RBP13.24□□□□□ -0.29
PTPN4-201ENST00000263708 IGHMBP2P38935 993 aaKnown RBP13.24□□□□□ -0.29
PTPN4-201ENST00000263708 VPS8Q8N3P4 1428 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 FSD2A1L4K1 749 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 KIF5CO60282 957 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 PRPF4BQ13523 1007 aaKnown RBP13.23□□□□□ -0.29
PTPN4-201ENST00000263708 CWC27Q6UX04 472 aaKnown RBP13.23□□□□□ -0.29
PTPN4-201ENST00000263708 ZMYND15Q9H091 742 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 ZNF287Q9HBT7 754 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 AIDAQ96BJ3 306 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 NUP62CLQ9H1M0 184 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 PDRG1Q9NUG6 133 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 SPECC1Q5M775 1068 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 UBXN4Q92575 508 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 PKNOX2Q96KN3 472 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 IKBKGQ9Y6K9 419 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 MAP3K9P80192 1104 aa13.23□□□□□ -0.29
PTPN4-201ENST00000263708 DHX57Q6P158 1386 aaKnown RBP13.23□□□□□ -0.29
PTPN4-201ENST00000263708 MKNK2Q9HBH9 465 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 NUP88Q99567 741 aaPredicted RBP13.22□□□□□ -0.29
PTPN4-201ENST00000263708 GPATCH11Q8N954 259 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 SREK1Q8WXA9 508 aaKnown RBP13.22□□□□□ -0.29
PTPN4-201ENST00000263708 SH3BP5O60239 455 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 HLTFQ14527 1009 aaKnown RBP eCLIP13.22□□□□□ -0.29
PTPN4-201ENST00000263708 C6orf163Q5TEZ5 329 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 HDGFL1Q5TGJ6 251 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 BLOC1S2Q6QNY1 142 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 SOGA1O94964 1423 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 MINDY4BA8MYZ0 360 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms