RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 TNNQ9UQP3 1299 aa28.79■■■□□ 2.2
SIX3-201ENST00000260653 CRB1P82279 1406 aa28.79■■■□□ 2.2
SIX3-201ENST00000260653 NCAPD2Q15021 1401 aa28.76■■■□□ 2.19
SIX3-201ENST00000260653 ERBB3P21860 1342 aa28.76■■■□□ 2.19
SIX3-201ENST00000260653 CHL1O00533 1208 aa28.76■■■□□ 2.19
SIX3-201ENST00000260653 COL18A1P39060 1754 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 ELL2O00472 640 aaPredicted RBP28.75■■■□□ 2.19
SIX3-201ENST00000260653 VAMP4O75379 141 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 RLBP1P12271 317 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 CAMTA1Q9Y6Y1 1673 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 GNAT3A8MTJ3 354 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 C8orf58Q8NAV2 365 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 COG6Q9Y2V7 657 aa28.75■■■□□ 2.19
SIX3-201ENST00000260653 MAP3K5Q99683 1374 aa28.74■■■□□ 2.19
SIX3-201ENST00000260653 ZKSCAN2Q63HK3 967 aa28.73■■■□□ 2.19
SIX3-201ENST00000260653 CLUAP1Q96AJ1 413 aa28.73■■■□□ 2.19
SIX3-201ENST00000260653 LRRC37A3O60309 1634 aa28.73■■■□□ 2.19
SIX3-201ENST00000260653 NHSL1Q5SYE7 1610 aa28.73■■■□□ 2.19
SIX3-201ENST00000260653 HTATSF1O43719 755 aaKnown RBP28.73■■■□□ 2.19
SIX3-201ENST00000260653 TWISTNBQ3B726 338 aaPredicted RBP28.73■■■□□ 2.19
SIX3-201ENST00000260653 ALDH1L2Q3SY69 923 aa28.73■■■□□ 2.19
SIX3-201ENST00000260653 CHRNA2Q15822 529 aa28.72■■■□□ 2.19
SIX3-201ENST00000260653 ZNF428Q96B54 188 aa28.72■■■□□ 2.19
SIX3-201ENST00000260653 KIAA0232Q92628 1395 aa28.72■■■□□ 2.19
SIX3-201ENST00000260653 MIS18AQ9NYP9 233 aa28.7■■■□□ 2.18
SIX3-201ENST00000260653 NOB1Q9ULX3 412 aaKnown RBP28.7■■■□□ 2.18
SIX3-201ENST00000260653 CPDO75976 1380 aa28.69■■■□□ 2.18
SIX3-201ENST00000260653 LMO7Q8WWI1 1683 aa28.69■■■□□ 2.18
SIX3-201ENST00000260653 KRT24Q2M2I5 525 aa28.69■■■□□ 2.18
SIX3-201ENST00000260653 LTBP4Q8N2S1 1624 aa28.68■■■□□ 2.18
SIX3-201ENST00000260653 TRIM27P14373 513 aa28.68■■■□□ 2.18
SIX3-201ENST00000260653 IL17REQ8NFR9 667 aa28.68■■■□□ 2.18
SIX3-201ENST00000260653 KIF16BQ96L93 1317 aa28.68■■■□□ 2.18
SIX3-201ENST00000260653 TSHZ2Q9NRE2 1034 aa28.68■■■□□ 2.18
SIX3-201ENST00000260653 ABCC6O95255 1503 aa28.67■■■□□ 2.18
SIX3-201ENST00000260653 FTSJ3Q8IY81 847 aaKnown RBP28.66■■■□□ 2.18
SIX3-201ENST00000260653 ATF7IPQ6VMQ6 1270 aa28.66■■■□□ 2.18
SIX3-201ENST00000260653 DZIP1LQ8IYY4 767 aaKnown RBP28.66■■■□□ 2.18
SIX3-201ENST00000260653 TSPYL4Q9UJ04 414 aa28.66■■■□□ 2.18
SIX3-201ENST00000260653 TCERG1O14776 1098 aaKnown RBP28.65■■■□□ 2.18
SIX3-201ENST00000260653 NLRP2Q9NX02 1062 aa28.65■■■□□ 2.18
SIX3-201ENST00000260653 ABCA3Q99758 1704 aa28.64■■■□□ 2.18
SIX3-201ENST00000260653 BRPF1P55201 1214 aaPredicted RBP28.64■■■□□ 2.17
SIX3-201ENST00000260653 PLEKHO1Q53GL0 409 aaPredicted RBP28.64■■■□□ 2.17
SIX3-201ENST00000260653 MRPL50Q8N5N7 158 aaKnown RBP28.64■■■□□ 2.17
SIX3-201ENST00000260653 ZNF530Q6P9A1 599 aaPredicted RBP28.63■■■□□ 2.17
SIX3-201ENST00000260653 FAM208AQ9UK61 1670 aaKnown RBP28.62■■■□□ 2.17
SIX3-201ENST00000260653 CSB-PGBD3P0DP91 1061 aa28.62■■■□□ 2.17
SIX3-201ENST00000260653 AMOTQ4VCS5 1084 aa28.62■■■□□ 2.17
SIX3-201ENST00000260653 ROBO1Q9Y6N7 1651 aa28.61■■■□□ 2.17
SIX3-201ENST00000260653 IPO8O15397 1037 aaKnown RBP28.61■■■□□ 2.17
SIX3-201ENST00000260653 MS4A1P11836 297 aa28.61■■■□□ 2.17
SIX3-201ENST00000260653 HAP1P54257 671 aaPredicted RBP28.61■■■□□ 2.17
SIX3-201ENST00000260653 MVPQ14764 893 aaKnown RBP28.61■■■□□ 2.17
SIX3-201ENST00000260653 PRDM11Q9NQV5 511 aa28.61■■■□□ 2.17
SIX3-201ENST00000260653 CEMIPQ8WUJ3 1361 aa28.6■■■□□ 2.17
SIX3-201ENST00000260653 KDM2BQ8NHM5 1336 aa28.6■■■□□ 2.17
SIX3-201ENST00000260653 AKAP4Q5JQC9 854 aa28.59■■■□□ 2.17
SIX3-201ENST00000260653 LGR6Q9HBX8 967 aa28.59■■■□□ 2.17
SIX3-201ENST00000260653 TAF7Q15545 349 aaPredicted RBP28.57■■■□□ 2.16
SIX3-201ENST00000260653 C1orf141Q5JVX7 400 aa28.56■■■□□ 2.16
SIX3-201ENST00000260653 RAPGEF4Q8WZA2 1011 aa28.56■■■□□ 2.16
SIX3-201ENST00000260653 MEGF6O75095 1541 aa28.55■■■□□ 2.16
SIX3-201ENST00000260653 MPRIPQ6WCQ1 1025 aa28.54■■■□□ 2.16
SIX3-201ENST00000260653 ITPRIPQ8IWB1 547 aa28.54■■■□□ 2.16
SIX3-201ENST00000260653 TMEM57Q8N5G2 664 aa28.54■■■□□ 2.16
SIX3-201ENST00000260653 CENPQQ7L2Z9 268 aaPredicted RBP28.54■■■□□ 2.16
SIX3-201ENST00000260653 VIRMAQ69YN4 1812 aaKnown RBP28.54■■■□□ 2.16
SIX3-201ENST00000260653 ARHGAP45Q92619 1136 aa28.52■■■□□ 2.16
SIX3-201ENST00000260653 AAMPQ13685 434 aa28.52■■■□□ 2.16
SIX3-201ENST00000260653 BABAM1Q9NWV8 329 aa28.51■■■□□ 2.16
SIX3-201ENST00000260653 TATP17735 454 aaPredicted RBP28.5■■■□□ 2.15
SIX3-201ENST00000260653 AHDC1Q5TGY3 1603 aaPredicted RBP28.5■■■□□ 2.15
SIX3-201ENST00000260653 DDX19BQ9UMR2 479 aa28.5■■■□□ 2.15
SIX3-201ENST00000260653 COL5A2P05997 1499 aaPredicted RBP28.5■■■□□ 2.15
SIX3-201ENST00000260653 RNMTO43148 476 aaKnown RBP28.49■■■□□ 2.15
SIX3-201ENST00000260653 PCDHB15Q9Y5E8 787 aa28.49■■■□□ 2.15
SIX3-201ENST00000260653 IGHDP01880 384 aa28.48■■■□□ 2.15
SIX3-201ENST00000260653 WDR17Q8IZU2 1322 aa28.48■■■□□ 2.15
SIX3-201ENST00000260653 SKAP1Q86WV1 359 aa28.48■■■□□ 2.15
SIX3-201ENST00000260653 TEFQ10587 303 aa28.47■■■□□ 2.15
SIX3-201ENST00000260653 OVOS2A0A0G2JMS6 1433 aa28.46■■■□□ 2.15
SIX3-201ENST00000260653 KDM3BQ7LBC6 1761 aa28.46■■■□□ 2.15
SIX3-201ENST00000260653 ABCC4O15439 1325 aa28.45■■■□□ 2.15
SIX3-201ENST00000260653 TOM1L2Q6ZVM7 507 aa28.44■■■□□ 2.14
SIX3-201ENST00000260653 SPG7Q9UQ90 795 aa28.44■■■□□ 2.14
SIX3-201ENST00000260653 ADAMTS7Q9UKP4 1686 aa28.44■■■□□ 2.14
SIX3-201ENST00000260653 API5Q9BZZ5 524 aaKnown RBP28.43■■■□□ 2.14
SIX3-201ENST00000260653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.43■■■□□ 2.14
SIX3-201ENST00000260653 SLC4A2P04920 1241 aa28.43■■■□□ 2.14
SIX3-201ENST00000260653 PKD1L3Q7Z443 1732 aa28.42■■■□□ 2.14
SIX3-201ENST00000260653 BTBD11A6QL63 1104 aa28.41■■■□□ 2.14
SIX3-201ENST00000260653 STRN4Q9NRL3 753 aa28.41■■■□□ 2.14
SIX3-201ENST00000260653 PLEKHG2Q9H7P9 1386 aa28.41■■■□□ 2.14
SIX3-201ENST00000260653 RGS12O14924 1447 aa28.41■■■□□ 2.14
SIX3-201ENST00000260653 PHKG2P15735 406 aa28.41■■■□□ 2.14
SIX3-201ENST00000260653 KCNQ3O43525 872 aa28.4■■■□□ 2.14
SIX3-201ENST00000260653 ZBTB40Q9NUA8 1239 aa28.4■■■□□ 2.14
SIX3-201ENST00000260653 KDM6AO15550 1401 aaPredicted RBP28.4■■■□□ 2.14
SIX3-201ENST00000260653 SIPA1L3O60292 1781 aaPredicted RBP28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms