RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CEP152O94986 1710 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 TBC1D2BQ9UPU7 963 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 KIAA1210Q9ULL0 1709 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 BCL2L13Q9BXK5 485 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 DBF4Q9UBU7 674 aaPredicted RBP16.65■□□□□ 0.26
LDLR-201ENST00000252444 EMILIN1Q9Y6C2 1016 aa16.65■□□□□ 0.26
LDLR-201ENST00000252444 ABCA6Q8N139 1617 aa16.64■□□□□ 0.26
LDLR-201ENST00000252444 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.63■□□□□ 0.252e-9■■□□□ 12.3
LDLR-201ENST00000252444 NOB1Q9ULX3 412 aaKnown RBP16.63■□□□□ 0.25
LDLR-201ENST00000252444 TRPM1Q7Z4N2 1603 aa16.63■□□□□ 0.25
LDLR-201ENST00000252444 TRIM34Q9BYJ4 488 aa16.63■□□□□ 0.25
LDLR-201ENST00000252444 PCDH11XQ9BZA7 1347 aa16.63■□□□□ 0.25
LDLR-201ENST00000252444 PCDH11YQ9BZA8 1340 aa16.63■□□□□ 0.25
LDLR-201ENST00000252444 DDX54Q8TDD1 881 aaKnown RBP16.63■□□□□ 0.25
LDLR-201ENST00000252444 UBAP1LF5GYI3 381 aa16.63■□□□□ 0.25
LDLR-201ENST00000252444 PDIA4P13667 645 aaKnown RBP16.63■□□□□ 0.25
LDLR-201ENST00000252444 HOXB7P09629 217 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 E9PCH4 1651 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 MCM2P49736 904 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 TRDNQ13061 729 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 DUSP27Q5VZP5 1158 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 PSMA5P28066 241 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 MAP3K5Q99683 1374 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 CCDC158Q5M9N0 1113 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 NGLY1Q96IV0 654 aa16.62■□□□□ 0.25
LDLR-201ENST00000252444 L1TD1Q5T7N2 865 aaKnown RBP16.61■□□□□ 0.25
LDLR-201ENST00000252444 SLC3A2P08195 630 aaKnown RBP16.61■□□□□ 0.25
LDLR-201ENST00000252444 AKAP2Q9Y2D5 859 aa16.6■□□□□ 0.25
LDLR-201ENST00000252444 CLTCQ00610 1675 aaKnown RBP16.6■□□□□ 0.25
LDLR-201ENST00000252444 ZCRB1Q8TBF4 217 aaKnown RBP16.6■□□□□ 0.25
LDLR-201ENST00000252444 FRMPD1Q5SYB0 1578 aa16.6■□□□□ 0.25
LDLR-201ENST00000252444 RILPL2Q969X0 211 aa16.6■□□□□ 0.25
LDLR-201ENST00000252444 KIDINS220Q9ULH0 1771 aa16.59■□□□□ 0.25
LDLR-201ENST00000252444 FANCIQ9NVI1 1328 aa16.59■□□□□ 0.25
LDLR-201ENST00000252444 IL2RBP14784 551 aa16.59■□□□□ 0.25
LDLR-201ENST00000252444 SNRPA1P09661 255 aaKnown RBP16.59■□□□□ 0.25
LDLR-201ENST00000252444 AIMP1Q12904 312 aaKnown RBP16.59■□□□□ 0.25
LDLR-201ENST00000252444 MADDQ8WXG6 1647 aa16.59■□□□□ 0.25
LDLR-201ENST00000252444 PHF14O94880 888 aa16.59■□□□□ 0.25
LDLR-201ENST00000252444 PPRC1Q5VV67 1664 aaKnown RBP16.59■□□□□ 0.25
LDLR-201ENST00000252444 LRRCC1Q9C099 1032 aa16.58■□□□□ 0.25
LDLR-201ENST00000252444 PTCH1Q13635 1447 aa16.58■□□□□ 0.24
LDLR-201ENST00000252444 XPCQ01831 940 aaPredicted RBP16.58■□□□□ 0.24
LDLR-201ENST00000252444 CDC42BPGQ6DT37 1551 aa16.58■□□□□ 0.24
LDLR-201ENST00000252444 AKAP17AQ02040 695 aaKnown RBP16.58■□□□□ 0.24
LDLR-201ENST00000252444 TRIM44Q96DX7 344 aaPredicted RBP16.58■□□□□ 0.24
LDLR-201ENST00000252444 DCAF5Q96JK2 942 aa16.58■□□□□ 0.24
LDLR-201ENST00000252444 POLKQ9UBT6 870 aa16.58■□□□□ 0.24
LDLR-201ENST00000252444 DEPDC5O75140 1603 aa16.58■□□□□ 0.24
LDLR-201ENST00000252444 CCDC57Q2TAC2 916 aa16.57■□□□□ 0.24
LDLR-201ENST00000252444 ERICH2A1L162 156 aa16.57■□□□□ 0.24
LDLR-201ENST00000252444 TPM4P67936 248 aa16.57■□□□□ 0.24
LDLR-201ENST00000252444 PLIN1O60240 522 aa16.56■□□□□ 0.24
LDLR-201ENST00000252444 NCOA3Q9Y6Q9 1424 aa16.56■□□□□ 0.24
LDLR-201ENST00000252444 GCP02774 474 aa16.56■□□□□ 0.24
LDLR-201ENST00000252444 HOXC9P31274 260 aa16.56■□□□□ 0.24
LDLR-201ENST00000252444 ALKQ9UM73 1620 aa16.56■□□□□ 0.24
LDLR-201ENST00000252444 IPO9Q96P70 1041 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 USP35Q9P2H5 1018 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 DDX11L8A8MPP1 907 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 EIF4A2Q14240 407 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 NECTIN2Q92692 538 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 SURF6O75683 361 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 IGHMBP2P38935 993 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 RARSP54136 660 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 ALDH1L1O75891 902 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 PDE4AP27815 886 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 TSR2Q969E8 191 aaKnown RBP16.55■□□□□ 0.24
LDLR-201ENST00000252444 PANK1Q8TE04 598 aa16.55■□□□□ 0.24
LDLR-201ENST00000252444 ZPR1O75312 459 aa16.54■□□□□ 0.24
LDLR-201ENST00000252444 SKOR2Q2VWA4 1001 aaPredicted RBP16.54■□□□□ 0.24
LDLR-201ENST00000252444 CNNM1Q9NRU3 951 aa16.54■□□□□ 0.24
LDLR-201ENST00000252444 PER1O15534 1290 aaPredicted RBP16.53■□□□□ 0.24
LDLR-201ENST00000252444 LTKP29376 864 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 SPATA31D1Q6ZQQ2 1576 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 MED14O60244 1454 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 DNAAF4Q8WXU2 420 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 SART3Q15020 963 aaKnown RBP16.53■□□□□ 0.24
LDLR-201ENST00000252444 CDCA7LQ96GN5 454 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
LDLR-201ENST00000252444 TTC39AQ5SRH9 613 aa16.52■□□□□ 0.24
LDLR-201ENST00000252444 TULP4Q9NRJ4 1543 aa16.52■□□□□ 0.24
LDLR-201ENST00000252444 BLMP54132 1417 aaPredicted RBP16.52■□□□□ 0.24
LDLR-201ENST00000252444 VWDEQ8N2E2 1590 aa16.52■□□□□ 0.23
LDLR-201ENST00000252444 PPP1R42Q7Z4L9 355 aa16.52■□□□□ 0.23
LDLR-201ENST00000252444 KIF1BPQ96EK5 621 aa16.52■□□□□ 0.23
LDLR-201ENST00000252444 SLAIN2Q9P270 581 aa16.52■□□□□ 0.23
LDLR-201ENST00000252444 TRIM29Q14134 588 aa16.51■□□□□ 0.23
LDLR-201ENST00000252444 MPHOSPH8Q99549 860 aa16.51■□□□□ 0.23
LDLR-201ENST00000252444 ISY1Q9ULR0 285 aaKnown RBP16.51■□□□□ 0.23
LDLR-201ENST00000252444 NACAP1Q9BZK3 213 aa16.5■□□□□ 0.23
LDLR-201ENST00000252444 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.5■□□□□ 0.23
LDLR-201ENST00000252444 CEP126Q9P2H0 1117 aa16.5■□□□□ 0.23
LDLR-201ENST00000252444 ANKRD1Q15327 319 aa16.5■□□□□ 0.23
LDLR-201ENST00000252444 CTNNA3Q9UI47 895 aa16.5■□□□□ 0.23
LDLR-201ENST00000252444 RBM19Q9Y4C8 960 aaKnown RBP16.5■□□□□ 0.23
LDLR-201ENST00000252444 USP6P35125 1406 aa16.5■□□□□ 0.23
LDLR-201ENST00000252444 FAM184AQ8NB25 1140 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 PREX1Q8TCU6 1659 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 RALYLQ86SE5 291 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms