RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 NCAPD2Q15021 1401 aa13.52□□□□□ -0.25
HMGCL-201ENST00000235958 RGPD1P0DJD0 1748 aa13.52□□□□□ -0.25
HMGCL-201ENST00000235958 A0A0G2JS52 829 aa13.51□□□□□ -0.25
HMGCL-201ENST00000235958 MYT1Q01538 1121 aa13.51□□□□□ -0.25
HMGCL-201ENST00000235958 PLEKHO1Q53GL0 409 aaPredicted RBP13.51□□□□□ -0.25
HMGCL-201ENST00000235958 ZCRB1Q8TBF4 217 aaKnown RBP13.51□□□□□ -0.25
HMGCL-201ENST00000235958 PLEKHF1Q96S99 279 aa13.51□□□□□ -0.25
HMGCL-201ENST00000235958 GLI3P10071 1580 aa13.5□□□□□ -0.25
HMGCL-201ENST00000235958 DDB1Q16531 1140 aa13.5□□□□□ -0.25
HMGCL-201ENST00000235958 CCDC146Q8IYE0 955 aa13.5□□□□□ -0.25
HMGCL-201ENST00000235958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.5□□□□□ -0.25
HMGCL-201ENST00000235958 AMOTQ4VCS5 1084 aa13.49□□□□□ -0.25
HMGCL-201ENST00000235958 DDX54Q8TDD1 881 aaKnown RBP13.49□□□□□ -0.25
HMGCL-201ENST00000235958 SPG7Q9UQ90 795 aa13.49□□□□□ -0.25
HMGCL-201ENST00000235958 DISP2A7MBM2 1401 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 KAT6BQ8WYB5 2073 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 NEFMP07197 916 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 PDE3BQ13370 1112 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 MTHFSDQ2M296 383 aaKnown RBP13.48□□□□□ -0.25
HMGCL-201ENST00000235958 RUNDC1Q96C34 613 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 MEGF6O75095 1541 aa13.48□□□□□ -0.25
HMGCL-201ENST00000235958 OVOS2A0A0G2JMS6 1433 aa13.47□□□□□ -0.25
HMGCL-201ENST00000235958 CYP27B1O15528 508 aa13.46□□□□□ -0.25
HMGCL-201ENST00000235958 MARCH10Q8NA82 808 aaPredicted RBP13.46□□□□□ -0.25
HMGCL-201ENST00000235958 MAPK8IP3Q9UPT6 1336 aa13.45□□□□□ -0.26
HMGCL-201ENST00000235958 APAF1O14727 1248 aa13.45□□□□□ -0.26
HMGCL-201ENST00000235958 ZNF530Q6P9A1 599 aaPredicted RBP13.45□□□□□ -0.26
HMGCL-201ENST00000235958 IFNL2Q8IZJ0 200 aa13.45□□□□□ -0.26
HMGCL-201ENST00000235958 SENP3-EIF4A1A0A087X0R7 540 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 TMPOP42166 694 aaKnown RBP13.44□□□□□ -0.26
HMGCL-201ENST00000235958 NEUROD2Q15784 382 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 NFE2L2Q16236 605 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 FAM182BQ5T319 152 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 KRT27Q7Z3Y8 459 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 GAS2L2Q8NHY3 880 aa13.44□□□□□ -0.26
HMGCL-201ENST00000235958 PHKG2P15735 406 aa13.43□□□□□ -0.26
HMGCL-201ENST00000235958 RIPK4P57078 832 aa13.43□□□□□ -0.26
HMGCL-201ENST00000235958 AKAP4Q5JQC9 854 aa13.43□□□□□ -0.26
HMGCL-201ENST00000235958 C1orf141Q5JVX7 400 aa13.43□□□□□ -0.26
HMGCL-201ENST00000235958 RRP7AQ9Y3A4 280 aaKnown RBP13.43□□□□□ -0.26
HMGCL-201ENST00000235958 PLEKHG2Q9H7P9 1386 aa13.43□□□□□ -0.26
HMGCL-201ENST00000235958 PCDH11XQ9BZA7 1347 aa13.42□□□□□ -0.26
HMGCL-201ENST00000235958 PCDH11YQ9BZA8 1340 aa13.42□□□□□ -0.26
HMGCL-201ENST00000235958 BRWD3Q6RI45 1802 aa13.42□□□□□ -0.26
HMGCL-201ENST00000235958 NKX1-1Q15270 411 aaPredicted RBP13.42□□□□□ -0.26
HMGCL-201ENST00000235958 THSD7AQ9UPZ6 1657 aa13.42□□□□□ -0.26
HMGCL-201ENST00000235958 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
HMGCL-201ENST00000235958 GNAT3A8MTJ3 354 aa13.41□□□□□ -0.26
HMGCL-201ENST00000235958 MPRIPQ6WCQ1 1025 aa13.41□□□□□ -0.26
HMGCL-201ENST00000235958 LGR6Q9HBX8 967 aa13.41□□□□□ -0.26
HMGCL-201ENST00000235958 WNK3Q9BYP7 1800 aa13.41□□□□□ -0.26
HMGCL-201ENST00000235958 RGS12O14924 1447 aa13.4□□□□□ -0.26
HMGCL-201ENST00000235958 HSP90AB1P08238 724 aaKnown RBP13.4□□□□□ -0.26
HMGCL-201ENST00000235958 IL17REQ8NFR9 667 aa13.4□□□□□ -0.26
HMGCL-201ENST00000235958 SALL2Q9Y467 1007 aaPredicted RBP13.4□□□□□ -0.26
HMGCL-201ENST00000235958 TNS2Q63HR2 1409 aa13.39□□□□□ -0.27
HMGCL-201ENST00000235958 HTATSF1O43719 755 aaKnown RBP13.39□□□□□ -0.27
HMGCL-201ENST00000235958 FAM196AQ6ZSG2 479 aa13.39□□□□□ -0.27
HMGCL-201ENST00000235958 RTF1Q92541 710 aaKnown RBP13.39□□□□□ -0.27
HMGCL-201ENST00000235958 DCAF5Q96JK2 942 aa13.39□□□□□ -0.27
HMGCL-201ENST00000235958 TRIM35Q9UPQ4 493 aa13.39□□□□□ -0.27
HMGCL-201ENST00000235958 PKD1L3Q7Z443 1732 aa13.39□□□□□ -0.27
HMGCL-201ENST00000235958 RNMTO43148 476 aaKnown RBP13.38□□□□□ -0.27
HMGCL-201ENST00000235958 PRIM1P49642 420 aaKnown RBP13.38□□□□□ -0.27
HMGCL-201ENST00000235958 DCTN1Q14203 1278 aa13.38□□□□□ -0.27
HMGCL-201ENST00000235958 MCM10Q7L590 875 aa13.38□□□□□ -0.27
HMGCL-201ENST00000235958 LRRC37A3O60309 1634 aa13.38□□□□□ -0.27
HMGCL-201ENST00000235958 DLG5Q8TDM6 1919 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 MAP3K5Q99683 1374 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 SHANK3Q9BYB0 1731 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 ERVV-2B6SEH9 535 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 KCNQ2O43526 872 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 ACSBG1Q96GR2 724 aa13.37□□□□□ -0.27
HMGCL-201ENST00000235958 NCBP3Q53F19 620 aaKnown RBP13.36□□□□□ -0.27
HMGCL-201ENST00000235958 NFATC2IPQ8NCF5 419 aa13.36□□□□□ -0.27
HMGCL-201ENST00000235958 THUMPD2Q9BTF0 503 aaKnown RBP13.36□□□□□ -0.27
HMGCL-201ENST00000235958 CABP4P57796 275 aa13.35□□□□□ -0.27
HMGCL-201ENST00000235958 LMOD3Q0VAK6 560 aa13.35□□□□□ -0.27
HMGCL-201ENST00000235958 WWC1Q8IX03 1113 aa13.35□□□□□ -0.27
HMGCL-201ENST00000235958 NGEFQ8N5V2 710 aa13.35□□□□□ -0.27
HMGCL-201ENST00000235958 SYTL4Q96C24 671 aaPredicted RBP13.35□□□□□ -0.27
HMGCL-201ENST00000235958 CCDC27Q2M243 656 aa13.34□□□□□ -0.27
HMGCL-201ENST00000235958 PTF1AQ7RTS3 328 aa13.34□□□□□ -0.27
HMGCL-201ENST00000235958 BCL9O00512 1426 aa13.33□□□□□ -0.28
HMGCL-201ENST00000235958 KDM6AO15550 1401 aaPredicted RBP13.33□□□□□ -0.28
HMGCL-201ENST00000235958 TRIM37O94972 964 aa13.33□□□□□ -0.28
HMGCL-201ENST00000235958 HNRNPUQ00839 825 aaKnown RBP eCLIP13.33□□□□□ -0.28
HMGCL-201ENST00000235958 TEFQ10587 303 aa13.33□□□□□ -0.28
HMGCL-201ENST00000235958 TAF7Q15545 349 aaPredicted RBP13.33□□□□□ -0.28
HMGCL-201ENST00000235958 PIGBQ92521 554 aa13.33□□□□□ -0.28
HMGCL-201ENST00000235958 SLC52A2Q9HAB3 445 aa13.33□□□□□ -0.28
HMGCL-201ENST00000235958 CEMIPQ8WUJ3 1361 aa13.32□□□□□ -0.28
HMGCL-201ENST00000235958 BCL11BQ9C0K0 894 aaPredicted RBP13.32□□□□□ -0.28
HMGCL-201ENST00000235958 TMOD3Q9NYL9 352 aa13.32□□□□□ -0.28
HMGCL-201ENST00000235958 SCN11AQ9UI33 1791 aa13.32□□□□□ -0.28
HMGCL-201ENST00000235958 VIRMAQ69YN4 1812 aaKnown RBP13.32□□□□□ -0.28
HMGCL-201ENST00000235958 WDR63Q8IWG1 891 aa13.31□□□□□ -0.28
HMGCL-201ENST00000235958 MIS18AQ9NYP9 233 aa13.31□□□□□ -0.28
HMGCL-201ENST00000235958 SBF2Q86WG5 1849 aa13.31□□□□□ -0.28
HMGCL-201ENST00000235958 ITGB4P16144 1822 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms