RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 SEMA3AQ14563 771 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 FASTKD3Q14CZ7 662 aaKnown RBP13.06□□□□□ -0.32
GTF3A-209ENST00000640289 ANKRD20A4Q4UJ75 823 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 PRRT3Q5FWE3 981 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 LDLRAP1Q5SW96 308 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 AFTPHQ6ULP2 937 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 KANSL1Q7Z3B3 1105 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 TMEM135Q86UB9 458 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 SERPINA9Q86WD7 417 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 ANKMY2Q8IV38 441 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 NXPE1Q8N323 547 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 SLC25A45Q8N413 288 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 ZNF548Q8NEK5 533 aaPredicted RBP13.06□□□□□ -0.32
GTF3A-209ENST00000640289 OR4L1Q8NH43 312 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 CCL4L1Q8NHW4 92 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 LMX1AQ8TE12 382 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 ULK4Q96C45 1275 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 EBNA1BP2Q99848 306 aaKnown RBP13.06□□□□□ -0.32
GTF3A-209ENST00000640289 RHOXF2Q9BQY4 288 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 LRRC61Q9BV99 259 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 SLC13A1Q9BZW2 595 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 CLPBQ9H078 707 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 TMEM168Q9H0V1 697 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 TRIM39Q9HCM9 518 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 VPS18Q9P253 973 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 MARCH4Q9P2E8 410 aaPredicted RBP13.06□□□□□ -0.32
GTF3A-209ENST00000640289 PLEKHM1Q9Y4G2 1056 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 DGKBQ9Y6T7 804 aa13.06□□□□□ -0.32
GTF3A-209ENST00000640289 E7ESA3 106 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 YKT6O15498 198 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 NUAK1O60285 661 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 CDK14O94921 469 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ZNF883P0CG24 379 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 CD59P13987 128 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 CTSEP14091 401 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 PGAM1P18669 254 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ACRV1P26436 265 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 AKT1P31749 480 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ARCN1P48444 511 aaKnown RBP13.05□□□□□ -0.32
GTF3A-209ENST00000640289 BLKP51451 505 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 B4GALNT1Q00973 533 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 CAV1Q03135 178 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 DBN1Q16643 649 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 GPR33Q49SQ1 333 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 PYCR3Q53H96 274 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 KIAA0930Q6ICG6 404 aaPredicted RBP13.05□□□□□ -0.32
GTF3A-209ENST00000640289 DET1Q7L5Y6 550 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 LDB1Q86U70 411 aaPredicted RBP13.05□□□□□ -0.32
GTF3A-209ENST00000640289 UNC5BQ8IZJ1 945 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 RASGEF1AQ8N9B8 481 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 SCARF2Q96GP6 870 aaPredicted RBP13.05□□□□□ -0.32
GTF3A-209ENST00000640289 BOCQ9BWV1 1114 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 PLAC1Q9HBJ0 212 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 FAM114A2Q9NRY5 505 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ZDHHC18Q9NUE0 388 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 SPASTQ9UBP0 616 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ZNHIT2Q9UHR6 403 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 GPSM3Q9Y4H4 160 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 ST14Q9Y5Y6 855 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 TEX264Q9Y6I9 313 aa13.05□□□□□ -0.32
GTF3A-209ENST00000640289 OR2AG2A6NM03 316 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CHUKO15111 745 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 FFAR2O15552 330 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 AQP9O43315 295 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 GRID2O43424 1007 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 PCDHGA12O60330 932 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 USP1O94782 785 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 F7P08709 466 aaPredicted RBP13.04□□□□□ -0.32
GTF3A-209ENST00000640289 MSH3P20585 1137 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CTSCP53634 463 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 LIMK1P53667 647 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 GTF2H3Q13889 308 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 PLA2G4EQ3MJ16 856 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 FASTKD1Q53R41 847 aaKnown RBP13.04□□□□□ -0.32
GTF3A-209ENST00000640289 TEX35Q5T0J7 233 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ARMC3Q5W041 872 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CRTC3Q6UUV7 619 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CENPUQ71F23 418 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CHST15Q7LFX5 561 aaPredicted RBP13.04□□□□□ -0.32
GTF3A-209ENST00000640289 GALNT13Q8IUC8 556 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ZBED8Q8IZ13 594 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 FBXO36Q8NEA4 188 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 NETO1Q8TDF5 533 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 IFT81Q8WYA0 676 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CFAP36Q96G28 342 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 TTC25Q96NG3 672 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 OR2M4Q96R27 311 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 COPS8Q99627 209 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 SAYSD1Q9NPB0 183 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 CATSPERZQ9NTU4 200 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ZDHHC3Q9NYG2 299 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ZC3H7BQ9UGR2 993 aaKnown RBP13.04□□□□□ -0.32
GTF3A-209ENST00000640289 BTBD3Q9Y2F9 522 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 FAM169AQ9Y6X4 670 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 TMEM131Q92545 1883 aa13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ZNF106Q9H2Y7 1883 aaKnown RBP13.04□□□□□ -0.32
GTF3A-209ENST00000640289 ZFHX2Q9C0A1 2572 aaPredicted RBP13.03□□□□□ -0.32
GTF3A-209ENST00000640289 CD3EAPO15446 510 aaKnown RBP13.03□□□□□ -0.32
GTF3A-209ENST00000640289 VEGFDO43915 354 aa13.03□□□□□ -0.32
GTF3A-209ENST00000640289 SH3BP5O60239 455 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms