RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CCHCR1Q8TD31 782 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 LYSMD1Q96S90 227 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 RTN4Q9NQC3 1192 aaKnown RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 RPL26L1Q9UNX3 145 aaKnown RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 POLHQ9Y253 713 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 SPTBN1Q01082 2364 aaKnown RBP19.13■□□□□ 0.65
CLN3-262ENST00000637699 NBPF19A0A087WUL8 3843 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 CDC14CA4D256 554 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 RASSF9O75901 435 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 NDUFA10O95299 355 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 VIPP01282 170 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 HLA-DQB2P05538 268 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 LEPRP48357 1165 aaKnown RBP19.13■□□□□ 0.65
CLN3-262ENST00000637699 QPCTQ16769 361 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 PLA2G4EQ3MJ16 856 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 NCBP2-AS2Q69YL0 99 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 CRTC3Q6UUV7 619 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 TMEM26Q6ZUK4 368 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 MLPHQ9BV36 600 aaPredicted RBP19.13■□□□□ 0.65
CLN3-262ENST00000637699 HAUS2Q9NVX0 235 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 RCOR3Q9P2K3 495 aaPredicted RBP19.13■□□□□ 0.65
CLN3-262ENST00000637699 IP6K2Q9UHH9 426 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 LNPEPQ9UIQ6 1025 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 ANAPC7Q9UJX3 599 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 TLK1Q9UKI8 766 aa19.13■□□□□ 0.65
CLN3-262ENST00000637699 NOTCH2Q04721 2471 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 PIPSLA2A3N6 862 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 RGSL1A5PLK6 1076 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 KIF1CO43896 1103 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 RFPL1O75677 317 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 SLC25A14O95258 325 aaPredicted RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 XRCC1P18887 633 aaPredicted RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 CCNCP24863 283 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 SLC19A1P41440 591 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 CLCNKAP51800 687 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 IL11RAQ14626 422 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 PAFAH1B3Q15102 231 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 SEPT7Q16181 437 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 IFI16Q16666 785 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 TDRD12Q587J7 1177 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 ALS2CLQ60I27 953 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 HIST2H2BCQ6DN03 193 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 NIPA2Q8N8Q9 360 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 SPATA16Q9BXB7 569 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 TWSG1Q9GZX9 223 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 THAP2Q9H0W7 228 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 ZNF768Q9H5H4 540 aaKnown RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 UCK1Q9HA47 277 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 DTLQ9NZJ0 730 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 ZNF624Q9P2J8 865 aaPredicted RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 SLC23A2Q9UGH3 650 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 AMACRQ9UHK6 382 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 DNAJC16Q9Y2G8 782 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 ADGRG1Q9Y653 693 aa19.12■□□□□ 0.65
CLN3-262ENST00000637699 RP1L1Q8IWN7 2480 aaPredicted RBP19.12■□□□□ 0.65
CLN3-262ENST00000637699 PDZK1P1A8MUH7 402 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 ANKRD66B4E2M5 251 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 MTA2O94776 668 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 CCNYL3P0C7X3 344 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 GJC1P36383 396 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 CD86P42081 329 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 DPYSL3Q14195 570 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 INSCQ1MX18 579 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 ATP13A4Q4VNC1 1196 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 ZNF569Q5MCW4 686 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 FAM71BQ8TC56 605 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 TSGA13Q96PP4 275 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 TRIM39Q9HCM9 518 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 KCND3Q9UK17 655 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 ICE1Q9Y2F5 2266 aa19.11■□□□□ 0.65
CLN3-262ENST00000637699 TOX3O15405 576 aaPredicted RBP19.1■□□□□ 0.65
CLN3-262ENST00000637699 SPAG6O75602 509 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 CREG1O75629 220 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 UQCRFS1P47985 274 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 ARSEP51690 589 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 GALNT3Q14435 633 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 CCDC183Q5T5S1 534 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 CACHD1Q5VU97 1274 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 FAM92BQ6ZTR7 304 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 ADGRG6Q86SQ4 1221 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 RSC1A1Q92681 617 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 FATE1Q969F0 183 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 EID2BQ96D98 161 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 NUP85Q9BW27 656 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 PADI1Q9ULC6 663 aa19.1■□□□□ 0.65
CLN3-262ENST00000637699 ZNF106Q9H2Y7 1883 aaKnown RBP19.09■□□□□ 0.65
CLN3-262ENST00000637699 VPS4BO75351 444 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 DNAJB5O75953 348 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 MBD3O95983 291 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 JCHAINP01591 159 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 SLC4A1P02730 911 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 PDGFAP04085 211 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 MMP2P08253 660 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 FGF5P12034 268 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 ZNF7P17097 686 aaPredicted RBP19.09■□□□□ 0.65
CLN3-262ENST00000637699 RPL10P27635 214 aaKnown RBP19.09■□□□□ 0.65
CLN3-262ENST00000637699 CASP14P31944 242 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 PMS2P54278 862 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 DNASE1L3Q13609 305 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 HADHQ16836 314 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms