RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 DGKAP23743 735 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 NFKBIAP25963 317 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ABCD3P28288 659 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SSTR2P30874 369 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DCTDP32321 178 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 GNL1P36915 607 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 EIF2S3P41091 472 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MXI1P50539 228 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CCR5P51681 352 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DVL1P1P54792 670 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CLDN2P57739 230 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 NLRP5P59047 1200 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PHEXP78562 749 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PDE1BQ01064 536 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 TLE2Q04725 743 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 G3BP1Q13283 466 aaKnown RBP eCLIP1.11□□□□□ -2.238e-6■□□□□ 9
SMARCB1-209ENST00000635578 NAE1Q13564 534 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PKP1Q13835 747 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 EFR3AQ14156 821 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 FRG1Q14331 258 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DRAP1Q14919 205 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CCDC6Q16204 474 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CTF1Q16619 201 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 GSTA3Q16772 222 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CCDC96Q2M329 555 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 EIF2S3LQ2VIR3 472 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ZSCAN23Q3MJ62 389 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MMEL1Q495T6 779 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC9B1Q4ZJI4 515 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ALFQ53S48 1182 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ZNF766Q5HY98 468 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PAPPA-AS1Q5QFB9 102 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC9C2Q5TAH2 1124 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 TBC1D9BQ66K14 1250 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 RGMBQ6NW40 437 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 TSSK4Q6SA08 328 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 GDPD4Q6W3E5 623 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 KRBA2Q6ZNG9 492 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MMS22LQ6ZRQ5 1243 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 BBS12Q6ZW61 710 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 BRINP3Q76B58 766 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC46A3Q7Z3Q1 461 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CPLX4Q7Z7G2 160 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 NOXA1Q86UR1 476 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HAPLN4Q86UW8 402 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 EXOC3L1Q86VI1 746 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SFR1Q86XK3 245 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 EPHX4Q8IUS5 362 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DHX40Q8IX18 779 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PGBD5Q8N414 524 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 AADATQ8N5Z0 425 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ZBTB2Q8N680 514 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PDILTQ8N807 584 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MAB21L3Q8N8X9 362 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 KCNH5Q8NCM2 988 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 LSM14AQ8ND56 463 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CADM4Q8NFZ8 388 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HUS1BQ8NHY5 278 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 UCMAQ8WVF2 138 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SECTM1Q8WVN6 248 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HERVK_113Q902F9 699 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ST8SIA4Q92187 359 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 RND1Q92730 232 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HTRA1Q92743 480 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 GTF3C6Q969F1 213 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 FBXL8Q96CD0 374 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PABPC5Q96DU9 382 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SCMH1Q96GD3 660 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HARBI1Q96MB7 349 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DUX3Q96PT4 197 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CMKLR1Q99788 373 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CLSTN3Q9BQT9 956 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MSTO1Q9BUK6 570 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PHF7Q9BWX1 381 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MMP28Q9H239 520 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 KIF9Q9HAQ2 790 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC28A3Q9HAS3 691 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 LRRC4Q9HBW1 653 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 PREBQ9HCU5 417 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CNGB3Q9NQW8 809 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC6A13Q9NSD5 602 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SMC4Q9NTJ3 1288 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 C20orf141Q9NUB4 165 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 BEX4Q9NWD9 120 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 TMEM160Q9NX00 188 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DDX43Q9NXZ2 648 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MAP3K20Q9NYL2 800 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 KCND2Q9NZV8 630 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 MPP6Q9NZW5 540 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 HAO1Q9UJM8 370 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 FBXO9Q9UK97 447 aaPredicted RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 SLC13A4Q9UKG4 626 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 POU2F3Q9UKI9 436 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 A4GNTQ9UNA3 340 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 ERVK-11Q9UQG0 969 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 VDAC3Q9Y277 283 aa1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 R3HDM2Q9Y2K5 976 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 DDX52Q9Y2R4 599 aaKnown RBP eCLIP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 LSM4Q9Y4Z0 139 aaKnown RBP1.11□□□□□ -2.23
SMARCB1-209ENST00000635578 CLDN16Q9Y5I7 305 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms