RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ANKRD66B4E2M5 251 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 KCNN4O15554 427 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 BUD23O43709 281 aaKnown RBP2.58□□□□□ -2
SCN1A-208ENST00000625916 SYNCRIPO60506 623 aaKnown RBP2.58□□□□□ -2
SCN1A-208ENST00000625916 EML2O95834 649 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 CLPTM1O96005 669 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 TPOP07202 933 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 ITGA3P26006 1051 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 SHC1P29353 583 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PGM1P36871 562 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 UBA7P41226 1012 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 CCR10P46092 362 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 SLC6A12P48065 614 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PPARDQ03181 441 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 RIGQ13278 110 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 KIR2DS5Q14953 304 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 USP41Q3LFD5 358 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 XKR6Q5GH73 641 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 C6orf141Q5SZD1 244 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 ALS2CLQ60I27 953 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 ATG16L1Q676U5 607 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PWWP2BQ6NUJ5 590 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 DOK6Q6PKX4 331 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PLXDC2Q6UX71 529 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PACS1Q6VY07 963 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 CDC20BQ86Y33 519 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 ZNRF4Q8WWF5 429 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 KLHL15Q96M94 604 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 TMEM47Q9BQJ4 181 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 APOBEC3GQ9HC16 384 aaKnown RBP2.58□□□□□ -2
SCN1A-208ENST00000625916 PLCXD1Q9NUJ7 323 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PRR34Q9NV39 138 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 PTTG2Q9NZH5 202 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 TMEM181Q9P2C4 612 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 FLT1P17948 1338 aa2.58□□□□□ -2
SCN1A-208ENST00000625916 C5orf60A6NFR6 353 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 TTC36A6NLP5 189 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 A8MU10 97 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 FAM90A26D6RGX4 464 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 SLCO1B7G3V0H7 640 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 TAF4O00268 1085 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 TNPO2O14787 897 aaKnown RBP2.57□□□□□ -2
SCN1A-208ENST00000625916 TFAP2AP05549 437 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 KRT19P08727 400 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 HOXB5P09067 269 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 FAM157CP0CG43 387 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 TLX1P31314 330 aaPredicted RBP2.57□□□□□ -2
SCN1A-208ENST00000625916 APOBEC1P41238 236 aaKnown RBP2.57□□□□□ -2
SCN1A-208ENST00000625916 COL28A1Q2UY09 1125 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 ARHGEF16Q5VV41 709 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 ERC1Q8IUD2 1116 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 LMNTD2Q8IXW0 634 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 CCDC13Q8IYE1 715 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 SCML4Q8N228 414 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 UTP15Q8TED0 518 aaKnown RBP2.57□□□□□ -2
SCN1A-208ENST00000625916 PYM1Q9BRP8 204 aaKnown RBP2.57□□□□□ -2
SCN1A-208ENST00000625916 RHNO1Q9BSD3 238 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 ECHDC1Q9NTX5 307 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 ASIC3Q9UHC3 531 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 HSF4Q9ULV5 492 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 CSAG2Q9Y5P2 127 aa2.57□□□□□ -2
SCN1A-208ENST00000625916 GAGE10A6NGK3 116 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 USP17L23D6RBM5 183 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 SLC22A2O15244 555 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 TRMUO75648 421 aaKnown RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 MOCS3O95396 460 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 TRIM49P0CI25 452 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 TRIM49CP0CI26 452 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 COX7A2P14406 83 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 LIFP15018 202 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 ANXA7P20073 488 aaKnown RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 UGT1A1P22309 533 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 UFM1P61960 85 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 PEX6Q13608 980 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 DRAP1Q14919 205 aaPredicted RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 BRD3Q15059 726 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 DUOXA1Q1HG43 343 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 MAP3K21Q5TCX8 1036 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 ANO1Q5XXA6 986 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 PAPD4Q6PIY7 484 aaKnown RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 DPPA4Q7L190 304 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 LRRC8DQ7L1W4 858 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 FBXL16Q8N461 479 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 GBGT1Q8N5D6 347 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 HARBI1Q96MB7 349 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 ACOX2Q99424 681 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 PKP2Q99959 881 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 LBHD1Q9BQE6 289 aaPredicted RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 SYT15Q9BQS2 421 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 FGFBP2Q9BYJ0 223 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 GLIS2Q9BZE0 524 aaPredicted RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 SLC28A3Q9HAS3 691 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 ZNF71Q9NQZ8 489 aaPredicted RBP2.56□□□□□ -2
SCN1A-208ENST00000625916 KLHL9Q9P2J3 617 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 DNAJB4Q9UDY4 337 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 ADAMTS9Q9P2N4 1935 aa2.56□□□□□ -2
SCN1A-208ENST00000625916 A0A1W2PP11 408 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 M0QZ24 198 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 SNAP23O00161 211 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 NBNO60934 754 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms