RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GPR33Q49SQ1 333 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 DNTTIP2Q5QJE6 756 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 LDLRAP1Q5SW96 308 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 PSAPL1Q6NUJ1 521 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 MAATS1Q7Z4T9 603 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 HOOK3Q86VS8 718 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 GKN2Q86XP6 184 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 GALNT13Q8IUC8 556 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 GPBAR1Q8TDU6 330 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 OR2M4Q96R27 311 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 CDC6Q99741 560 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 DUSP23Q9BVJ7 150 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 KIFC1Q9BW19 673 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 FAM96AQ9H5X1 160 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 ZNHIT2Q9UHR6 403 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 PRKAB1Q9Y478 270 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 GPSM3Q9Y4H4 160 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 ST14Q9Y5Y6 855 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 TRBV5-4A0A0C4DH59 114 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 FAM187AA6NFU0 413 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 EFCAB8A8MWE9 144 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 RAD51CO43502 376 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CTBSQ01459 385 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TUBB2AQ13885 445 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 LVRNQ6Q4G3 990 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TAF8Q7Z7C8 310 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 GLRX5Q86SX6 157 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 NRROSQ86YC3 692 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 NXPE1Q8N323 547 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 MPP5Q8N3R9 675 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 HDAC10Q969S8 669 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TUBB2BQ9BVA1 445 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TRIM31Q9BZY9 425 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 MRM3Q9HC36 420 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TREX1Q9NSU2 369 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 FTSJ1Q9UET6 329 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CRLS1Q9UJA2 301 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 DOLKQ9UPQ8 538 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 PLEKHM1Q9Y4G2 1056 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 GOLGA4Q13439 2230 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CCDC162PA2VCL2 907 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 OR51F1A6NGY5 319 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SDR42E2A6NKP2 422 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 GRID2O43424 1007 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SEC31AO94979 1220 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 LDOC1O95751 146 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 PRSS56P0CW18 603 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 NMBRP28336 390 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CDKN1CP49918 316 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CACNG1Q06432 222 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ILF3Q12906 894 aaKnown RBP eCLIP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 LRP8Q14114 963 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 MORF4L2Q15014 288 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 PROX2Q3B8N5 592 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ZRANB3Q5FWF4 1079 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 C6orf132Q5T0Z8 1188 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ARMC3Q5W041 872 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 HIBCHQ6NVY1 386 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ZCCHC8Q6NZY4 707 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CHST15Q7LFX5 561 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 FAM181AQ8N9Y4 354 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SCG3Q8WXD2 468 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ULK4Q96C45 1275 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SNF8Q96H20 258 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 CNDP2Q96KP4 475 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 TTC25Q96NG3 672 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 GSDMCQ9BYG8 508 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 ZCCHC2Q9C0B9 1178 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SOX13Q9UN79 622 aa16.35■□□□□ 0.21
CCDC28A-202ENST00000611852 SPAARA0A1B0GVQ0 90 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 TP73O15350 636 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 TNFSF14O43557 240 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 GOT2P00505 430 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 AK4P27144 223 aaPredicted RBP16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 FOXN2P32314 431 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 RPL21P46778 160 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 PPM1JQ5JR12 505 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 ZNF547Q8IVP9 402 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 PIANPQ8IYJ0 282 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 AGGF1Q8N302 714 aaeCLIP16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 RASGEF1AQ8N9B8 481 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 MFSD3Q96ES6 412 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 SGSM3Q96HU1 749 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 APOLD1Q96LR9 279 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 ERP44Q9BS26 406 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 BOCQ9BWV1 1114 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 SNX24Q9Y343 169 aa16.34■□□□□ 0.21
CCDC28A-202ENST00000611852 LY6G6EA0A0G2JKS1 128 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SMAPO00193 183 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 ACRV1P26436 265 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 AKT1P31749 480 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 ITGA8P53708 1063 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 PRAMEP78395 509 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SIM1P81133 766 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 B4GALNT1Q00973 533 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 CASC4Q6P4E1 433 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SLC30A9Q6PML9 568 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 AFTPHQ6ULP2 937 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 CRTC3Q6UUV7 619 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 CES3Q6UWW8 571 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms