RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CDKN1CP49918 316 aaPredicted RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 ARL4CP56559 192 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 DHX9Q08211 1270 aaKnown RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 TMEM115Q12893 351 aaPredicted RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 HIF1AQ16665 826 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 MSS51Q4VC12 460 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 PYCR3Q53H96 274 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 PRRT3Q5FWE3 981 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 CES3Q6UWW8 571 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 MARK2Q7KZI7 788 aaKnown RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 NXPE1Q8N323 547 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 FSTL5Q8N475 847 aaPredicted RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 OR6P1Q8NGX9 317 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 LMX1AQ8TE12 382 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 SEC14L1Q92503 715 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 STAMBPL1Q96FJ0 436 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 PWWP2AQ96N64 755 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 OR2M4Q96R27 311 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 OR2AG1Q9H205 316 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 TRNAU1APQ9NX07 287 aaKnown RBP19.13■□□□□ 0.65
UPF1-209ENST00000600310 MAD1L1Q9Y6D9 718 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 TMEM131Q92545 1883 aa19.13■□□□□ 0.65
UPF1-209ENST00000600310 NEMP2A6NFY4 417 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 BHMG1C9JSJ3 638 aaPredicted RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 TM4SF5O14894 197 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 CHUKO15111 745 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 SCAMP1O15126 338 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 FLRT2O43155 660 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 AQP9O43315 295 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 USP1O94782 785 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 CDK14O94921 469 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ARNTP27540 789 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 CAV1Q03135 178 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 C1orf61Q13536 156 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 TRADDQ15628 312 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 BBS9Q3SYG4 887 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ANKRD20A4Q4UJ75 823 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 KIAA0930Q6ICG6 404 aaPredicted RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 PSAPL1Q6NUJ1 521 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 SERPINA9Q86WD7 417 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 GALNT13Q8IUC8 556 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 PIANPQ8IYJ0 282 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 SDR16C5Q8N3Y7 309 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 OR4L1Q8NH43 312 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 HEXDCQ8WVB3 486 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ART4Q93070 314 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 LRRC39Q96DD0 335 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 FCRL3Q96P31 734 aaPredicted RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 EBNA1BP2Q99848 306 aaKnown RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 TRIM56Q9BRZ2 755 aaKnown RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 NAT9Q9BTE0 207 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ZCCHC2Q9C0B9 1178 aaKnown RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 CLPBQ9H078 707 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 TMEM168Q9H0V1 697 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ZDHHC3Q9NYG2 299 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 CDV3Q9UKY7 258 aaKnown RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 PCYT1BQ9Y5K3 369 aaPredicted RBP19.12■□□□□ 0.65
UPF1-209ENST00000600310 RPS6KL1Q9Y6S9 549 aa19.12■□□□□ 0.65
UPF1-209ENST00000600310 ZNF106Q9H2Y7 1883 aaKnown RBP19.11■□□□□ 0.65
UPF1-209ENST00000600310 CABIN1Q9Y6J0 2220 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 E7ESA3 106 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 GRID2O43424 1007 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 PRSS56P0CW18 603 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 GIMD1P0DJR0 217 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 PGAM1P18669 254 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 PAMP19021 973 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 SDHBP21912 280 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 ACRV1P26436 265 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 GRK6P43250 576 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 GUCY2DQ02846 1103 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 GTF2H3Q13889 308 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 ELOCQ15369 112 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 INAVAQ3KP66 663 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 ZDHHC24Q6UX98 284 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 TAS2R42Q7RTR8 314 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 ERMP1Q7Z2K6 904 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 RASGEF1AQ8N9B8 481 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.11■□□□□ 0.65
UPF1-209ENST00000600310 ZNF669Q96BR6 464 aaPredicted RBP19.11■□□□□ 0.65
UPF1-209ENST00000600310 TTC25Q96NG3 672 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 COPS8Q99627 209 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 ZNHIT2Q9UHR6 403 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 DMGDHQ9UI17 866 aaKnown RBP19.11■□□□□ 0.65
UPF1-209ENST00000600310 GPSM3Q9Y4H4 160 aa19.11■□□□□ 0.65
UPF1-209ENST00000600310 TP53BP1Q12888 1972 aaPredicted RBP19.1■□□□□ 0.65
UPF1-209ENST00000600310 DMXL1Q9Y485 3027 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 IGLV3-16A0A075B6K0 115 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 ZCWPW2A0A1B0GU75 182 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 LMO7DNF2Z398 122 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 TPP1O14773 563 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 SH3BP5O60239 455 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 BANF1O75531 89 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 VAPBO95292 243 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 CELA2BP08218 269 aaPredicted RBP19.1■□□□□ 0.65
UPF1-209ENST00000600310 MSH3P20585 1137 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 AKT1P31749 480 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 ARCN1P48444 511 aaKnown RBP19.1■□□□□ 0.65
UPF1-209ENST00000600310 PLTPP55058 493 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 DBN1Q16643 649 aa19.1■□□□□ 0.65
UPF1-209ENST00000600310 RSPO4Q2I0M5 234 aaPredicted RBP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms