RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 GRID2O43424 1007 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 KIF1CO43896 1103 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 MTA2O94776 668 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 TIAF1O95411 115 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 TRBC1P01850 177 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 NELFEP18615 380 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 LPOP22079 712 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 PTGIRP43119 386 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 MMP13P45452 471 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 HCAR3P49019 387 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 EPHB1P54762 984 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 JAM2P57087 298 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 POLR2FP61218 127 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 MAXP61244 160 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 OGDHQ02218 1023 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 LAMB3Q13751 1172 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 DPYSQ14117 519 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 ELOAQ14241 798 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 PWWP2BQ6NUJ5 590 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 BPHLQ86WA6 291 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 PSTKQ8IV42 348 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 TP53INP2Q8IXH6 220 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 RBM12BQ8IXT5 1001 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 IQCKQ8N0W5 287 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 SNRNP25Q9BV90 132 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 CARD9Q9H257 536 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 OSGEPL1Q9H4B0 414 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 ZWILCHQ9H900 591 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 POT1Q9NUX5 634 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 SEPT11Q9NVA2 429 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 EPHA6Q9UF33 1036 aa9.98□□□□□ -0.81
TRIM28-210ENST00000597618 CNOT6Q9ULM6 557 aaKnown RBP9.98□□□□□ -0.81
TRIM28-210ENST00000597618 POLEQ07864 2286 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 ANKUB1A6NFN9 424 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 GPR89AB7ZAQ6 455 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PRPSAP2O60256 369 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 NUAK1O60285 661 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FZD6O60353 706 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 CPNE3O75131 537 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 CBX6O95503 412 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PDHA1P08559 390 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 GPR89BP0CG08 455 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PSMA2P25787 234 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 CDH6P55285 790 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 ACY1Q03154 408 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 HSP90AA4PQ58FG1 418 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 HENMT1Q5T8I9 393 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 MARC1Q5VT66 337 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 IRGCQ6NXR0 463 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FAM199XQ6PEV8 388 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 TMCO3Q6UWJ1 677 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FAM92BQ6ZTR7 304 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 ATPAF2Q8N5M1 289 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 RBMXL3Q8N7X1 1067 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 SIDT2Q8NBJ9 832 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FDCSPQ8NFU4 85 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 UBXN4Q92575 508 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 RSC1A1Q92681 617 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 MARVELD3Q96A59 401 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 SNRNP40Q96DI7 357 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 C19orf60Q96EN9 201 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 SLC41A2Q96JW4 573 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PEBP4Q96S96 227 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 NUDT9Q9BW91 350 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 RAB33BQ9H082 229 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 WASH6PQ9NQA3 447 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FAM207AQ9NSI2 230 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 KLC4Q9NSK0 619 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 GPR83Q9NYM4 423 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 SCHIP1Q9P0W5 487 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PCSK1NQ9UHG2 260 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 FARSAQ9Y285 508 aaKnown RBP9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PDZD2O15018 2839 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 NF1P21359 2839 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 MTORP42345 2549 aa9.97□□□□□ -0.81
TRIM28-210ENST00000597618 PDZK1P1A8MUH7 402 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 FADS2P1A8MWK0 482 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 H3BRJ5 948 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 KRT86O43790 486 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 MAFKO60675 156 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 TMEM63AO94886 807 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 CA4P22748 312 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 SLC19A1P41440 591 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 ITGA1P56199 1179 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 INSCQ1MX18 579 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 IZUMO3Q5VZ72 239 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 TMEM102Q8N9M5 508 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 ADAMTS17Q8TE56 1095 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 MR1Q95460 341 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 SMIM14Q96QK8 99 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 SMAD5Q99717 465 aaKnown RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 POLR1EQ9GZS1 481 aaKnown RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 FAM83DQ9H4H8 585 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 AKIRIN1Q9H9L7 192 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 NLRC4Q9NPP4 1024 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 ASF1BQ9NVP2 202 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 CWC15Q9P013 229 aaKnown RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 SEMA5BQ9P283 1151 aa9.96□□□□□ -0.82
TRIM28-210ENST00000597618 ZNF624Q9P2J8 865 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-210ENST00000597618 ATXN10Q9UBB4 475 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms