RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GPRC6AQ5T6X5 926 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 CCDC137Q6PK04 289 aaKnown RBP14.39□□□□□ -0.11
VRK3-206ENST00000594090 CRTC3Q6UUV7 619 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 TMPRSS12Q86WS5 348 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 ZNF398Q8TD17 642 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 ZDHHC1Q8WTX9 485 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 STYXQ8WUJ0 223 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 CCDC74AQ96AQ1 378 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 ZCCHC2Q9C0B9 1178 aaKnown RBP14.39□□□□□ -0.11
VRK3-206ENST00000594090 ASB8Q9H765 288 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 NLE1Q9NVX2 485 aaPredicted RBP14.39□□□□□ -0.11
VRK3-206ENST00000594090 MSRB2Q9Y3D2 182 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 NCOR2Q9Y618 2525 aa14.39□□□□□ -0.11
VRK3-206ENST00000594090 FAM149AA5PLN7 773 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 MROH6A6NGR9 719 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 H7C0S8 307 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 CCL22O00626 93 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 FANCGO15287 622 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 OPA1O60313 960 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 CDK14O94921 469 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 KRT14P02533 472 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 GLB1P16278 677 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 FNTAP49354 379 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 VPS41P49754 854 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 MAZP56270 477 aaKnown RBP14.38□□□□□ -0.11
VRK3-206ENST00000594090 GTF2H3Q13889 308 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 TRIP13Q15645 432 aaPredicted RBP14.38□□□□□ -0.11
VRK3-206ENST00000594090 CCDC38Q502W7 563 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 CERCAMQ5T4B2 595 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 CCNI2Q6ZMN8 369 aaPredicted RBP14.38□□□□□ -0.11
VRK3-206ENST00000594090 LRRTM4Q86VH4 590 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 C17orf82Q86X59 251 aaPredicted RBP14.38□□□□□ -0.11
VRK3-206ENST00000594090 MARCH9Q86YJ5 346 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 NAGSQ8N159 534 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 OR6C4Q8NGE1 309 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 MAPK15Q8TD08 544 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 PATE1Q8WXA2 126 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 CCDC3Q9BQI4 270 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 RABGEF1Q9UJ41 708 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 KCNK6Q9Y257 313 aa14.38□□□□□ -0.11
VRK3-206ENST00000594090 COL27A1Q8IZC6 1860 aaPredicted RBP14.38□□□□□ -0.11
VRK3-206ENST00000594090 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.37□□□□□ -0.11
VRK3-206ENST00000594090 HEATR9A2RTY3 570 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 CTAGE9A4FU28 777 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 AGAP14A8MT82 685 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 KMOO15229 486 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 ECEL1O95672 775 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 MC4RP32245 332 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 GPS1Q13098 491 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 PLA2G4EQ3MJ16 856 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 TRAPPC5Q8IUR0 188 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 ZNF547Q8IVP9 402 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 C17orf53Q8N3J3 647 aaPredicted RBP14.37□□□□□ -0.11
VRK3-206ENST00000594090 GATA6Q92908 595 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 CAPZA3Q96KX2 299 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 TTC25Q96NG3 672 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 RANBP9Q96S59 729 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 TMEM121BQ9BXQ6 578 aaPredicted RBP14.37□□□□□ -0.11
VRK3-206ENST00000594090 NEU2Q9Y3R4 380 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 SAR1BQ9Y6B6 198 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 SLC30A1Q9Y6M5 507 aa14.37□□□□□ -0.11
VRK3-206ENST00000594090 ARHGEF17Q96PE2 2063 aaPredicted RBP14.37□□□□□ -0.11
VRK3-206ENST00000594090 CCDC78A2IDD5 438 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 NUDT21O43809 227 aaKnown RBP14.36□□□□□ -0.11
VRK3-206ENST00000594090 EML2O95834 649 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 JUPP14923 745 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 TPSB2P20231 275 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 MSH3P20585 1137 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 ITGALP20701 1170 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 PSMA3P25788 255 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 AKT1P31749 480 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CLCNKAP51800 687 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CDK16Q00536 496 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 LAMB3Q13751 1172 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 TPSAB1Q15661 275 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 INSCQ1MX18 579 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CDCP2Q5VXM1 449 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 MICALCLQ6ZW33 695 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 SNX20Q7Z614 316 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 C11orf96Q7Z7L8 435 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 RASGEF1AQ8N9B8 481 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 GRK7Q8WTQ7 553 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 ULK4Q96C45 1275 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CDKN2AIPNLQ96HQ2 116 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 TIMM29Q9BSF4 260 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 ABCG4Q9H172 646 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 OSGEPL1Q9H4B0 414 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 KLC4Q9NSK0 619 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 TBC1D29Q9UFV1 150 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 SLC23A2Q9UGH3 650 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CRLS1Q9UJA2 301 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 CLCA2Q9UQC9 943 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 RNF215Q9Y6U7 377 aa14.36□□□□□ -0.11
VRK3-206ENST00000594090 TCRBV7S3A2A0A539 114 aa14.35□□□□□ -0.11
VRK3-206ENST00000594090 A6NCN8 305 aa14.35□□□□□ -0.11
VRK3-206ENST00000594090 CASC3O15234 703 aaKnown RBP14.35□□□□□ -0.11
VRK3-206ENST00000594090 MT-CO3P00414 261 aa14.35□□□□□ -0.11
VRK3-206ENST00000594090 PNLIPP16233 465 aa14.35□□□□□ -0.11
VRK3-206ENST00000594090 ZNF7P17097 686 aaPredicted RBP14.35□□□□□ -0.11
VRK3-206ENST00000594090 ADRA1DP25100 572 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms