RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MCCP23508 829 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 HOXC8P31273 242 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 ELF1P32519 619 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 PIP4K2AP48426 406 aaPredicted RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 TUBP50607 506 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 LUMP51884 338 aaPredicted RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 CLDN20P56880 219 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 IRX1P78414 480 aaPredicted RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 TFAP4Q01664 338 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 PTP4A2Q12974 167 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 ZRSR2Q15696 482 aaKnown RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 PNLIPRP3Q17RR3 467 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 DUOXA1Q1HG43 343 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 ZNF280DQ6N043 979 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 ACVR1CQ8NER5 493 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 SGCDQ92629 289 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 TAF15Q92804 592 aaKnown RBP eCLIP2.7□□□□□ -1.98
VPS35-207ENST00000568191 LINC00479Q96M42 142 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 PCYT2Q99447 389 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 GLIS2Q9BZE0 524 aaPredicted RBP2.7□□□□□ -1.98
VPS35-207ENST00000568191 SMC4Q9NTJ3 1288 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 CYP46A1Q9Y6A2 500 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 SMAD5-AS1Q9Y6J3 95 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 RNF215Q9Y6U7 377 aa2.7□□□□□ -1.98
VPS35-207ENST00000568191 RRN3P2A6NIE6 340 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 DUXAA6NLW8 204 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 SNAP23O00161 211 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 NR5A2O00482 541 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 SEC14L2O76054 403 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 NKX2-2O95096 273 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 TFAP2AP05549 437 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 ERVK-10P10266 1014 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 APOBEC1P41238 236 aaKnown RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 MAPK9P45984 424 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 CTSCP53634 463 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 SLC9C2Q5TAH2 1124 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 TRIM65Q6PJ69 517 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 PIWIL4Q7Z3Z4 852 aaKnown RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 HEATR4Q86WZ0 1026 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 NRROSQ86YC3 692 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 APLFQ8IW19 511 aaPredicted RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 TMTC2Q8N394 836 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 EMC1Q8N766 993 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 DDHD1Q8NEL9 900 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 MYRIPQ8NFW9 859 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 OR1J2Q8NGS2 313 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 OR14L1PQ8NHC6 308 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 PSPC1Q8WXF1 523 aaKnown RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 TMEM190Q8WZ59 177 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 HTRA1Q92743 480 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 IGSF8Q969P0 613 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 MOAP1Q96BY2 351 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 RHBDF1Q96CC6 855 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 ZNF599Q96NL3 588 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 OPRPNQ99935 248 aaPredicted RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 MAGIXQ9H6Y5 334 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 SLC38A7Q9NVC3 462 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 C2orf42Q9NWW7 574 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 TAS2R10Q9NYW0 307 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 CWC15Q9P013 229 aaKnown RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 INTS6Q9UL03 887 aaKnown RBP2.69□□□□□ -1.98
VPS35-207ENST00000568191 ARHGAP26Q9UNA1 814 aa2.69□□□□□ -1.98
VPS35-207ENST00000568191 PRAG1Q86YV5 1406 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 A0A0G2JNG1 304 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 A0A1W2PQM1 296 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 NDUFAF8A1L188 74 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 LDLRAD4O15165 306 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 DAB1O75553 588 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 IPO7O95373 1038 aaKnown RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 F9P00740 461 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 KRT19P08727 400 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 GNB3P16520 340 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 IL7RP16871 459 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 RPL7AP62424 266 aaKnown RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 GNB1P62873 340 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 TBX2Q13207 712 aaPredicted RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 KIR2DS5Q14953 304 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 NAB2Q15742 525 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ADIPOQQ15848 244 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 PRICKLE4Q2TBC4 344 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ZFP69Q49AA0 526 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ZC2HC1CQ53FD0 456 aaPredicted RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 KRTCAP3Q53RY4 240 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ALS2CLQ60I27 953 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 INO80CQ6PI98 192 aaPredicted RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 RAD9BQ6WBX8 426 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ZNF497Q6ZNH5 498 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 FASTKD5Q7L8L6 764 aaKnown RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 GTSCR1Q86UQ5 136 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 HACE1Q8IYU2 909 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 CPXCR1Q8N123 301 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 NGEFQ8N5V2 710 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 SLC5A8Q8N695 610 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ST8SIA4Q92187 359 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 OXNAD1Q96HP4 312 aaPredicted RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 ART5Q96L15 291 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 PRMT6Q96LA8 375 aaPredicted RBP2.68□□□□□ -1.98
VPS35-207ENST00000568191 MAP7D2Q96T17 732 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 TRIM15Q9C019 465 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 SLC25A18Q9H1K4 315 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms