RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 METTL18O95568 372 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 GAS8O95995 478 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 IFNB1P01574 187 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 ZNF8P17098 575 aaPredicted RBP13.24□□□□□ -0.29
CLK3-216ENST00000564468 VCLP18206 1134 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 GPR3P46089 330 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 CLCNKAP51800 687 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 GDF10P55107 478 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 RTP5Q14D33 572 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 ISXQ2M1V0 245 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 ATP13A5Q4VNC0 1218 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 KCTD11Q693B1 232 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 DRICH1Q6PGQ1 229 aaPredicted RBP13.24□□□□□ -0.29
CLK3-216ENST00000564468 ADGRG6Q86SQ4 1221 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 LRRTM4Q86VH4 590 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 MARCH9Q86YJ5 346 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 CCNJLQ8IV13 435 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 LSMEM2Q8N112 164 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 CCDC89Q8N998 374 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 AVL9Q8NBF6 648 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 OR4K2Q8NGD2 314 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 C1orf54Q8WWF1 131 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 LRRN3Q9H3W5 708 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 PAK5Q9P286 719 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 DRG1Q9Y295 367 aaKnown RBP13.24□□□□□ -0.29
CLK3-216ENST00000564468 ARL5AQ9Y689 179 aa13.24□□□□□ -0.29
CLK3-216ENST00000564468 ADAMTS20P59510 1910 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 E7EVH7 732 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CHUKO15111 745 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CEP104O60308 925 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 KCNJ13O60928 360 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 USP12O75317 370 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 ECEL1O95672 775 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 AP2A1O95782 977 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 FGGP02679 453 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 RPLP0P05388 317 aaKnown RBP13.23□□□□□ -0.29
CLK3-216ENST00000564468 ACP5P13686 325 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 LMAN1P49257 510 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CCL7P80098 99 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CYP4F3Q08477 520 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 TMEM115Q12893 351 aaPredicted RBP13.23□□□□□ -0.29
CLK3-216ENST00000564468 SNX1Q13596 522 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 LAMB3Q13751 1172 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CHRNA6Q15825 494 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 CLPPQ16740 277 aaPredicted RBP13.23□□□□□ -0.29
CLK3-216ENST00000564468 LONRF2Q1L5Z9 754 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 INSCQ1MX18 579 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 DENND5AQ6IQ26 1287 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 FAM151BQ6UXP7 276 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 NAGSQ8N159 534 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 ARL14Q8N4G2 192 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 ZNF398Q8TD17 642 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 PBKQ96KB5 322 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 TMEM74Q96NL1 305 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 NAP1L3Q99457 506 aaPredicted RBP13.23□□□□□ -0.29
CLK3-216ENST00000564468 TIMM29Q9BSF4 260 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 ARFGAP3Q9NP61 516 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 SMOXQ9NWM0 555 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 RAXQ9Y2V3 346 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 PLEKHM1Q9Y4G2 1056 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 RNF215Q9Y6U7 377 aa13.23□□□□□ -0.29
CLK3-216ENST00000564468 ASH1LQ9NR48 2969 aaKnown RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 KIR2DS5A0A0G2JLQ3 304 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 A0A0G2JNG1 304 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 KIR2DS3K7RE56 304 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 BUD23O43709 281 aaKnown RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 ZNF7P17097 686 aaPredicted RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 FASLGP48023 281 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 MAZP56270 477 aaKnown RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 SPARCL1Q14515 664 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 KIR2DS5Q14953 304 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 NR1D2Q14995 579 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 GSTA5Q7RTV2 222 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 ZNF438Q7Z4V0 828 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 SPRED1Q7Z699 444 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 SLC9B2Q86UD5 537 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 Q8N9G6 341 aaPredicted RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 DDHD1Q8NEL9 900 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 MDM1Q8TC05 714 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 HEXDCQ8WVB3 486 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 ULK4Q96C45 1275 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 ZNF514Q96K75 400 aaPredicted RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 STRADBQ9C0K7 418 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 ASB8Q9H765 288 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 KCNK6Q9Y257 313 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 PRKAB1Q9Y478 270 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 ST14Q9Y5Y6 855 aa13.22□□□□□ -0.29
CLK3-216ENST00000564468 DNMT3AQ9Y6K1 912 aaPredicted RBP13.22□□□□□ -0.29
CLK3-216ENST00000564468 KLHL33A6NCF5 533 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 D6RAR5 112 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 KIF5CO60282 957 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A9O60656 530 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 MTX2O75431 263 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 SRP72O76094 671 aaKnown RBP13.21□□□□□ -0.29
CLK3-216ENST00000564468 PRAMEF1O95521 474 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 RALBP11234 206 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 F3P13726 295 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 UGT1A6P19224 532 aa13.21□□□□□ -0.29
CLK3-216ENST00000564468 MSH3P20585 1137 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms