RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CRLS1Q9UJA2 301 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 RPS6KL1Q9Y6S9 549 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 DGKBQ9Y6T7 804 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 TDRD6O60522 2096 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 PIAS2O75928 621 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 USP1O94782 785 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 RASGRP1O95267 797 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ASMTLO95671 621 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 IVLP07476 585 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ZNF8P17098 575 aaPredicted RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 PGAM1P18669 254 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ECHS1P30084 290 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 PRAMEP78395 509 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 PPARDQ03181 441 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 PDIA2Q13087 525 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 DBN1Q16643 649 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 RD3Q7Z3Z2 195 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ALYREFQ86V81 257 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 SERPINA9Q86WD7 417 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 GATAD2AQ86YP4 633 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ANKMY2Q8IV38 441 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 GPR161Q8N6U8 529 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 OR6P1Q8NGX9 317 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 CARS2Q9HA77 564 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 TRIM39Q9HCM9 518 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 TM7SF3Q9NS93 570 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 VPS18Q9P253 973 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 APOBEC3BQ9UH17 382 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 MOSPD1Q9UJG1 213 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 MAGEB16A2A368 324 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 C4orf47A7E2U8 309 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 GOLGA8KD6RF30 607 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 GOLGA8TH3BQL2 631 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 FOXD2O60548 495 aaPredicted RBP21.54■■□□□ 1.04
SNX1-210ENST00000560260 VAPBO95292 243 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 ACRV1P26436 265 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 GNPDA1P46926 289 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 ARRB1P49407 418 aaPredicted RBP21.54■■□□□ 1.04
SNX1-210ENST00000560260 CRYMQ14894 314 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 TCEA2Q15560 299 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 GPR33Q49SQ1 333 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 TEX35Q5T0J7 233 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 UNC5BQ8IZJ1 945 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 OR4L1Q8NH43 312 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 GDAP1Q8TB36 358 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 SAP25Q8TEE9 199 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 ULK4Q96C45 1275 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 SGSM3Q96HU1 749 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 BOCQ9BWV1 1114 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 CLPBQ9H078 707 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 FAM114A2Q9NRY5 505 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 PRKAB1Q9Y478 270 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 PLEKHM1Q9Y4G2 1056 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 ST14Q9Y5Y6 855 aa21.54■■□□□ 1.04
SNX1-210ENST00000560260 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.53■■□□□ 1.04
SNX1-210ENST00000560260 NUAK1O60285 661 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 ZNF883P0CG24 379 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 CARSP49589 748 aaKnown RBP21.53■■□□□ 1.04
SNX1-210ENST00000560260 CTSCP53634 463 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 CAV1Q03135 178 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 C1orf61Q13536 156 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 LDLRAP1Q5SW96 308 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 STPG1Q5TH74 334 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 UNC5AQ6ZN44 842 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 TAS2R42Q7RTR8 314 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 LDB1Q86U70 411 aaPredicted RBP21.53■■□□□ 1.04
SNX1-210ENST00000560260 RASGEF1AQ8N9B8 481 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 FBXO36Q8NEA4 188 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 ZNF548Q8NEK5 533 aaPredicted RBP21.53■■□□□ 1.04
SNX1-210ENST00000560260 LRRC39Q96DD0 335 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 CFAP36Q96G28 342 aa21.53■■□□□ 1.04
SNX1-210ENST00000560260 IGLV3-16A0A075B6K0 115 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 SGTAO43765 313 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 DFNA5O60443 496 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 TNFP01375 233 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 GIMD1P0DJR0 217 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 DGKAP23743 735 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 HNRNPKP61978 463 aaKnown RBP eCLIP21.52■■□□□ 1.03
SNX1-210ENST00000560260 TMEM115Q12893 351 aaPredicted RBP21.52■■□□□ 1.03
SNX1-210ENST00000560260 PYCR3Q53H96 274 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 STEAP4Q687X5 459 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 CENPUQ71F23 418 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 ZNF547Q8IVP9 402 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 SLC25A45Q8N413 288 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 CCL4L1Q8NHW4 92 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 TMEM168Q9H0V1 697 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 SAYSD1Q9NPB0 183 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 CATSPERZQ9NTU4 200 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 ZDHHC3Q9NYG2 299 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 BTBD3Q9Y2F9 522 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 CABIN1Q9Y6J0 2220 aa21.52■■□□□ 1.03
SNX1-210ENST00000560260 CFAP54Q96N23 3096 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 H3BM21 787 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 CHUKO15111 745 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 YKT6O15498 198 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 VEGFDO43915 354 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 PCDHGA12O60330 932 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 F7P08709 466 aaPredicted RBP21.51■■□□□ 1.03
SNX1-210ENST00000560260 CD59P13987 128 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 AKT1P31749 480 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms