RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SGSM3Q96HU1 749 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 VPS35Q96QK1 796 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 TRIB3Q96RU7 358 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 LZTFL1Q9NQ48 299 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 THSD1Q9NS62 852 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 KLF15Q9UIH9 416 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 TFR2Q9UP52 801 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 WASF3Q9UPY6 502 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 SHOC2Q9UQ13 582 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 ZNF148Q9UQR1 794 aa8.59□□□□□ -1.03
USP3-208ENST00000558285 KIR2DS5A0A0G2JLQ3 304 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 A0A0G2JNG1 304 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 GOLGA6L10A0A0M3HER8 536 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 GLYATL1P3A0A0U1RQE8 302 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 KIR2DS3K7RE56 304 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 KMOO15229 486 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 INPP4BO15327 924 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 GRID2O43424 1007 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 KIF5CO60282 957 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CSO75390 466 aaKnown RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 SPINK2P20155 84 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 ITGALP20701 1170 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 ADCY8P40145 1251 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 HALP42357 657 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 INSM1Q01101 510 aaPredicted RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 TARDBPQ13148 414 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP3-208ENST00000558285 KIR2DS5Q14953 304 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 INSCQ1MX18 579 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TUSC1Q2TAM9 212 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SIRPB2Q5JXA9 342 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CERCAMQ5T4B2 595 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TMEM164Q5U3C3 297 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 ALS2CLQ60I27 953 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CYB5D1Q6P9G0 228 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 OGFOD3Q6PK18 319 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 B4GALNT4Q76KP1 1039 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 GSTA5Q7RTV2 222 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SLC9B2Q86UD5 537 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 LRRTM4Q86VH4 590 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CCNJLQ8IV13 435 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TRIM48Q8IWZ4 208 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 RBM12BQ8IXT5 1001 aaKnown RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 SLC35F3Q8IY50 421 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 LRRN4CLQ8ND94 238 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 OR10G6Q8NH81 332 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 ALG3Q92685 438 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SCAMP4Q969E2 229 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SCARF2Q96GP6 870 aaPredicted RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 AHCYL2Q96HN2 611 aaKnown RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 COX14Q96I36 57 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TBL1YQ9BQ87 522 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CCDC3Q9BQI4 270 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 FICDQ9BVA6 458 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TMEM168Q9H0V1 697 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SUDS3Q9H7L9 328 aaPredicted RBP8.58□□□□□ -1.04
USP3-208ENST00000558285 UBP1Q9NZI7 540 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TAAR2Q9P1P5 351 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 MCM8Q9UJA3 840 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 SHROOM3Q8TF72 1996 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 CFAP54Q96N23 3096 aa8.58□□□□□ -1.04
USP3-208ENST00000558285 TMEM131Q92545 1883 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TRABD2BA6NFA1 517 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 C1QTNF9BB2RNN3 333 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 QSOX1O00391 747 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CDK14O94921 469 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 C1QTNF9P0C862 333 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 MSH3P20585 1137 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 AKT1P31749 480 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GPLD1P80108 840 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CTBSQ01459 385 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PYCR3Q53H96 274 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TPRG1LQ5T0D9 272 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 BROXQ5VW32 411 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GUSBP11Q6P575 273 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 KLHL35Q6PF15 583 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 SLC30A9Q6PML9 568 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 KDELC1Q6UW63 502 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 PPP1R21Q6ZMI0 780 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 KDM7AQ6ZMT4 941 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 MARK2Q7KZI7 788 aaKnown RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 NLRP9Q7RTR0 991 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 SLC13A5Q86YT5 568 aaPredicted RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 FAM71DQ8N9W8 422 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 KYQ8NBH2 561 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 GPR156Q8NFN8 814 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 WDR36Q8NI36 951 aaKnown RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 LRRN4Q8WUT4 740 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CCDC74AQ96AQ1 378 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 MRGPRX2Q96LB1 330 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 ZNF578Q96N58 590 aaPredicted RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 SLC38A3Q99624 504 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 LGR4Q9BXB1 951 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 CLPBQ9H078 707 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 TCEAL2Q9H3H9 227 aaPredicted RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 POLR1BQ9H9Y6 1135 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 MRPL40Q9NQ50 206 aaKnown RBP8.57□□□□□ -1.04
USP3-208ENST00000558285 PAK5Q9P286 719 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 LRIT1Q9P2V4 623 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 BOLA1Q9Y3E2 137 aa8.57□□□□□ -1.04
USP3-208ENST00000558285 DNMT3AQ9Y6K1 912 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms