RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 VPREB1P12018 145 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ARSBP15848 533 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 PFKFB1P16118 471 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 FASLGP48023 281 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 PPP2R2BQ00005 443 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 MAD2L1Q13257 205 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ZNF273Q14593 569 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 DECR1Q16698 335 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ATP13A5Q4VNC0 1218 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 FAM98BQ52LJ0 330 aaKnown RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 DCST1Q5T197 706 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 C6orf163Q5TEZ5 329 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 FRG2Q64ET8 278 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 TMEM211Q6ICI0 200 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 TEX38Q6PEX7 206 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 SHQ1Q6PI26 577 aaKnown RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 PAPD4Q6PIY7 484 aaKnown RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ZNF367Q7RTV3 350 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ADCK2Q7Z695 626 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 RASGEF1CQ8N431 466 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CAMKVQ8NCB2 501 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 GDAP1Q8TB36 358 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 COQ8BQ96D53 544 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 LRFN5Q96NI6 719 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 NEK1Q96PY6 1258 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 DDOQ99489 341 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 FAM129AQ9BZQ8 928 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 C2orf40Q9H1Z8 148 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CATSPERBQ9H7T0 1116 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 NOL11Q9H8H0 719 aaKnown RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 SEBOXQ9HB31 216 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CHMP1AQ9HD42 196 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CNGB3Q9NQW8 809 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 TAS2R14Q9NYV8 317 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CDC14AQ9UNH5 594 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 TMEM184BQ9Y519 407 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 TMEM272A0A1B0GTI8 110 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 PSMD14O00487 310 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 NDUFS4O43181 175 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 SPINT2O43291 252 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 ITM2AO43736 263 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 ZIC3O60481 467 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 SYNCRIPO60506 623 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 SOX30O94993 753 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 NDUFB8O95169 186 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 EPN2O95208 641 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 KCNK5O95279 499 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 SLU7O95391 586 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 LINGO3P0C6S8 592 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 CYP19A1P11511 503 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 ACHEP22303 614 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 TLX1P31314 330 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 TCF7P36402 384 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 APOBEC1P41238 236 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 NPY4RP50391 375 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 CTTNQ14247 550 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 MVPQ14764 893 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 TRIP6Q15654 476 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 EFNB3Q15768 340 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 CDC37Q16543 378 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 DUS1LQ6P1R4 473 aaKnown RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 TRAPPC11Q7Z392 1133 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 FOXRED2Q8IWF2 684 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 MAML2Q8IZL2 1156 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 DSELQ8IZU8 1212 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 PRSS3P2Q8NHM4 247 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 APOLD1Q96LR9 279 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 FNBP1Q96RU3 617 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 SMC6Q96SB8 1091 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 TMEM79Q9BSE2 394 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 RAD21L1Q9H4I0 556 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 TUBA8Q9NY65 449 aaPredicted RBP5□□□□□ -1.61
SCFD1-209ENST00000553280 IL36RNQ9UBH0 155 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 PAM16Q9Y3D7 125 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 LIPGQ9Y5X9 500 aa5□□□□□ -1.61
SCFD1-209ENST00000553280 ASTN2O75129 1339 aaPredicted RBP4.99□□□□□ -1.61
SCFD1-209ENST00000553280 B4DGG1 531 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 CCDC188H7C350 402 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 KCNN4O15554 427 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 PRAMEF11O60813 436 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 CELF2O95319 508 aaKnown RBP4.99□□□□□ -1.61
SCFD1-209ENST00000553280 NAGAP17050 411 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 UGT1A1P22309 533 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 HRH2P25021 359 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 NMBRP28336 390 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 BDKRB2P30411 391 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 STX2P32856 288 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 SRSF1Q07955 248 aaKnown RBP eCLIP4.99□□□□□ -1.61
SCFD1-209ENST00000553280 FOXM1Q08050 763 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 PPIGQ13427 754 aaKnown RBP eCLIP4.99□□□□□ -1.61
SCFD1-209ENST00000553280 PTPRCAPQ14761 206 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 SYT16Q17RD7 645 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 MANEAQ5SRI9 462 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 MPP7Q5T2T1 576 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 FAM198BQ6UWH4 519 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 Q6ZSV7 163 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 IRF2BP2Q7Z5L9 587 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 PIP4P1Q86T03 277 aa4.99□□□□□ -1.61
SCFD1-209ENST00000553280 ZC3HC1Q86WB0 502 aaKnown RBP4.99□□□□□ -1.61
SCFD1-209ENST00000553280 NRROSQ86YC3 692 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms