RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 COILP38432 576 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 MAGEA6P43360 314 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 CDH17Q12864 832 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 NFATC2Q13469 925 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 ITGA9Q13797 1035 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 KCTD19Q17RG1 926 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 C14orf28Q4W4Y0 310 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 CERCAMQ5T4B2 595 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 GPRC6AQ5T6X5 926 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 HES3Q5TGS1 186 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 SLC30A9Q6PML9 568 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 CHST15Q7LFX5 561 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 ZNF438Q7Z4V0 828 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 NAGSQ8N159 534 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 OR6C4Q8NGE1 309 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 NAP1L3Q99457 506 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 DPEP2Q9H4A9 486 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 SUDS3Q9H7L9 328 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 NLE1Q9NVX2 485 aaPredicted RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 PIH1D1Q9NWS0 290 aaKnown RBP12.82□□□□□ -0.36
VPS28-216ENST00000533806 FKBPLQ9UIM3 349 aa12.82□□□□□ -0.36
VPS28-216ENST00000533806 TRBV5-4A0A0C4DH59 114 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 FAM149AA5PLN7 773 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 NTN3O00634 580 aaPredicted RBP12.81□□□□□ -0.36
VPS28-216ENST00000533806 SGTAO43765 313 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 NUDT21O43809 227 aaKnown RBP12.81□□□□□ -0.36
VPS28-216ENST00000533806 CDK14O94921 469 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 PRAMEF1O95521 474 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ECEL1O95672 775 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 MT-CO3P00414 261 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 APRTP07741 180 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 GLB1P16278 677 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 TCP1P17987 556 aaKnown RBP12.81□□□□□ -0.36
VPS28-216ENST00000533806 ACTN2P35609 894 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 HADHAP40939 763 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ACTR1BP42025 376 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ACTR1AP61163 376 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 GNG11P61952 73 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ACVR1Q04771 509 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 POU6F1Q14863 301 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 NR1D2Q14995 579 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 LDLRAP1Q5SW96 308 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 MICALCLQ6ZW33 695 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 CREG2Q8IUH2 290 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 RASGEF1AQ8N9B8 481 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ZDHHC1Q8WTX9 485 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 PATE1Q8WXA2 126 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 MAGOHBQ96A72 148 aaKnown RBP12.81□□□□□ -0.36
VPS28-216ENST00000533806 CCDC74AQ96AQ1 378 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 CDKN2AIPNLQ96HQ2 116 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 DNAJC1Q96KC8 554 aaKnown RBP12.81□□□□□ -0.36
VPS28-216ENST00000533806 CNTNAP3BQ96NU0 1288 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 RANBP9Q96S59 729 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 CCDC3Q9BQI4 270 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 CNTNAP3Q9BZ76 1288 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 TBC1D29Q9UFV1 150 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 RIMKLBQ9ULI2 386 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 RNF215Q9Y6U7 377 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 ASXL3Q9C0F0 2248 aa12.81□□□□□ -0.36
VPS28-216ENST00000533806 IGLV3-16A0A075B6K0 115 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 A0A1W2PQM1 296 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 B4DGG1 531 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 CCL22O00626 93 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 KMOO15229 486 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ACP5P13686 325 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ZNF7P17097 686 aaPredicted RBP12.8□□□□□ -0.36
VPS28-216ENST00000533806 ARSDP51689 593 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 CTSCP53634 463 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 MAZP56270 477 aaKnown RBP12.8□□□□□ -0.36
VPS28-216ENST00000533806 CDK16Q00536 496 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 B4GALNT1Q00973 533 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 TARDBPQ13148 414 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS28-216ENST00000533806 KCNJ11Q14654 390 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 IYDQ6PHW0 289 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 XKR5Q6UX68 686 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ZNF534Q76KX8 674 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 GSTA5Q7RTV2 222 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 SNX20Q7Z614 316 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 LRRTM4Q86VH4 590 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 SFRP1Q8N474 314 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ARL14Q8N4G2 192 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 OR13J1Q8NGT2 312 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 MAPK15Q8TD08 544 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 STYXQ8WUJ0 223 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ZNF778Q96MU6 729 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 TIMM29Q9BSF4 260 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 ASB8Q9H765 288 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 LRIT1Q9P2V4 623 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 CLCA2Q9UQC9 943 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 PLXNB3Q9ULL4 1909 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 KNTC1P50748 2209 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 PTPRBP23467 1997 aa12.8□□□□□ -0.36
VPS28-216ENST00000533806 USP24Q9UPU5 2620 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 TCRBV7S3A2A0A539 114 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 C1QTNF9BB2RNN3 333 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 E7EVH7 732 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 PPM1DO15297 605 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 PHF2O75151 1096 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 TCEA3O75764 348 aa12.79□□□□□ -0.36
VPS28-216ENST00000533806 C1QTNF9P0C862 333 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms