RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KCNA5P22460 613 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 RYKP34925 604 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 PBX3P40426 434 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 MATR3P43243 847 aaKnown RBP eCLIP4.81□□□□□ -1.64
CD44-220ENST00000525688 GBE1Q04446 702 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 MED22Q15528 200 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 DPCR1Q3MIW9 517 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 MIDNQ504T8 468 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ALG10Q5BKT4 473 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ZNF805Q5CZA5 627 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ALG10BQ5I7T1 473 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ERMARDQ5T6L9 678 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 STRIP1Q5VSL9 837 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 PAPD7Q5XG87 772 aaKnown RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 TTI2Q6NXR4 508 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 FBXO42Q6P3S6 717 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SARM1Q6SZW1 724 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 PET117Q6UWS5 81 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ZNF782Q6ZMW2 699 aaPredicted RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 DBX2Q6ZNG2 339 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 RGS9BPQ6ZS82 235 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 CCDC186Q7Z3E2 898 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 GPAT4Q86UL3 456 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ARHGAP12Q8IWW6 846 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 FAM185AQ8N0U4 392 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SLC25A41Q8N5S1 370 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 GMCL1P1Q8NEA9 526 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 FIBINQ8TAL6 211 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 CCDC114Q96M63 670 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SH2D3AQ9BRG2 576 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 TUBB6Q9BUF5 446 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 NRIP3Q9NQ35 241 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 TCF7L2Q9NQB0 619 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SLC35C2Q9NQQ7 365 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SELENONQ9NZV5 590 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 SUCLA2Q9P2R7 463 aaPredicted RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 ZNF70Q9UC06 446 aaPredicted RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 HAO1Q9UJM8 370 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ING1Q9UK53 422 aaPredicted RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 UTS2RQ9UKP6 389 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ADAM18Q9Y3Q7 739 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 AKAP12Q02952 1782 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 MARF1Q9Y4F3 1742 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 POLR2AP24928 1970 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 TTC21BQ7Z4L5 1316 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TTC21AQ8NDW8 1320 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 NRKQ7Z2Y5 1582 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TRBV5-3A0A0A0MS03 114 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 WIPF3A6NGB9 483 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 USP17L23D6RBM5 183 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 F8W810 466 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PSMD14O00487 310 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 IKBKBO14920 756 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PGRMC2O15173 223 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 LIASO43766 372 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 UGDHO60701 494 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TOP3BO95985 862 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 TFP02787 698 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CTSAP10619 480 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 HSPA5P11021 654 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 PDHBP11177 359 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TMEM11P17152 192 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 BMP5P22003 454 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CERS1P27544 350 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TTKP33981 857 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 GPR12P47775 334 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 HNMTP50135 292 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 HDAC4P56524 1084 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TGFB2P61812 414 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 RPS13P62277 151 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 PSMC6P62333 389 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PRAMEP78395 509 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CCNA1P78396 465 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CSTF3Q12996 717 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 AIMP2Q13155 320 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 RPA4Q13156 261 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 TNFAIP1Q13829 316 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 NCAPH2Q6IBW4 605 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CAVIN1Q6NZI2 390 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 TRAT1Q6PIZ9 186 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 MEX3BQ6ZN04 569 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 ZNF66Q6ZN08 573 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 CADM3Q8N126 398 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 HDDC3Q8N4P3 179 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 WDTC1Q8N5D0 677 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 POMGNT2Q8NAT1 580 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 DRAXINQ8NBI3 349 aaPredicted RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 MCPH1Q8NEM0 835 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 FAM216AQ8WUB2 273 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PSPC1Q8WXF1 523 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 POMGNT1Q8WZA1 660 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 SIPA1Q96FS4 1042 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 PDLIM5Q96HC4 596 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 RAB3IPQ96QF0 476 aaPredicted RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 WDR83Q9BRX9 315 aaKnown RBP4.8□□□□□ -1.64
CD44-220ENST00000525688 KRT23Q9C075 422 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 FTOQ9C0B1 505 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-220ENST00000525688 SEMA4CQ9C0C4 833 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 ANKRD2Q9GZV1 360 aa4.8□□□□□ -1.64
CD44-220ENST00000525688 IKZF4Q9H2S9 585 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms