RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DAGLAQ9Y4D2 1042 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM237AA0A1B0GTK4 181 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 IFNA17P01571 189 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 YBX3P16989 372 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF3P17036 446 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TPSB2P20231 275 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 BUD31P41223 144 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 AQP4P55087 323 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CREMQ03060 361 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 NFE2L1Q14494 772 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TPSAB1Q15661 275 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZDHHC20Q5W0Z9 365 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF280DQ6N043 979 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ITIH5Q86UX2 942 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 UNC93AQ86WB7 457 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 KLHL36Q8N4N3 616 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 GIMAP5Q96F15 307 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 C8orf48Q96LL4 319 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 OR5B12Q96R08 314 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CHIAQ9BZP6 476 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZYG11BQ9C0D3 744 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 RGCCQ9H4X1 137 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 EXO5Q9H790 373 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM205AQ6ZU69 1335 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 FXYD6-FXYD2A0A087WZ82 144 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SH3PXD2BA1X283 911 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SULT1C2O00338 296 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC33A1O00400 549 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 THEGLP0DJG4 465 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 MATN1P21941 496 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CD83Q01151 205 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 QPCTQ16769 361 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 AP5B1Q2VPB7 878 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ABCA11PQ4W5N1 156 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM91A1Q658Y4 838 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CXorf57Q6NSI4 855 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TMEM161BQ8NDZ6 487 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FNDC8Q8TC99 324 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TLCD1Q96CP7 247 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 HSFY1Q96LI6 401 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 HYLS1Q96M11 299 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 NPAS2Q99743 824 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC39A3Q9BRY0 314 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FUZQ9BT04 418 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TTLL2Q9BWV7 592 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FXYD6Q9H0Q3 95 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLA2Q9H6Q3 261 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SYNDIG1Q9H7V2 258 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FOLH1BQ9HBA9 442 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF334Q9HCZ1 680 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ATP13A1Q9HD20 1204 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SNTG1Q9NSN8 517 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ABI2Q9NYB9 513 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 N6AMT1Q9Y5N5 214 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TSTD3H0UI37 97 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 GPR182O15218 404 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC19A2O60779 497 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 MBL2P11226 248 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 MAPK3P27361 379 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 IFI44LQ53G44 452 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TATDN1Q6P1N9 297 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF280BQ86YH2 543 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SPATA22Q8NHS9 363 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TIFAQ96CG3 184 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 PNMA5Q96PV4 448 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 POFUT2Q9Y2G5 429 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 OR10H1Q9Y4A9 318 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 PCDHGA11Q9Y5H2 935 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 NPHS1O60500 1241 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CYP11A1P05108 521 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 GSTM3P21266 225 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 LHCGRP22888 699 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 GBX2P52951 348 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC3A1Q07837 685 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FOXM1Q08050 763 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 COLEC12Q5KU26 742 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CIR1Q86X95 450 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 OR4A15Q8NGL6 344 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 C1orf216Q8TAB5 229 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SGCDQ92629 289 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 MSANTD3Q96H12 275 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 RNF157Q96PX1 679 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 BCL7BQ9BQE9 202 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CDADC1Q9BWV3 514 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TNKS2Q9H2K2 1166 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SAV1Q9H4B6 383 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 USP29Q9HBJ7 922 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SCP2D1Q9UJQ7 156 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 VWA7Q9Y334 891 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF780BQ9Y6R6 833 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TCRBV9S1A1TA0A576 114 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CBX4O00257 560 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 DNM1LO00429 736 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 IFNA4P05014 189 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 NELFEP18615 380 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 PBLDP30039 288 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CHRNA5P30532 468 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TUBP50607 506 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF143P52747 638 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms